Locus 889

Sequence ID 3L_DroMel_CAF1
Location 2,691,350 – 2,691,456
Length 106
Max. P 0.938094
window1366

overview

Window 6

Location 2,691,350 – 2,691,456
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 94.81
Mean single sequence MFE -21.26
Consensus MFE -19.40
Energy contribution -19.68
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.91
SVM decision value 1.27
SVM RNA-class probability 0.938094
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2691350 106 - 23771897
AAUUACACUUUUUCGCUCGAUUUUAAUCCUGGAAAUGCUGAAUUUUUCCCGUGAAAUACAGCAAACUUUGAGUGAAUUAAAGAGAGCUUUGACGUAAAUUACUUUU
..((((.....((((((((((((((....))))).(((((.(((((......))))).)))))....)))))))))((((((....)))))).))))......... ( -23.00)
>DroSec_CAF1 52393 106 - 1
AAUUACACUUUUUCGCUCGAUUUUAAUCCUGGAAAUUCUGAAUUUUUCCCGUAAAAUACAGCGAACUUUGAGUGAAUUAAAGAGAGCUUUGACGUAAAUUACUUUU
.....(((((.((((((..((((((.....(((((.........)))))..))))))..))))))....)))))..((((((....)))))).............. ( -20.00)
>DroSim_CAF1 51231 106 - 1
AAUUACACUUUUUCGCUCGAUUUUAAUCCUGGAAAUGCUGAAUUUUUCCCGUAAAAUACAGCGAACUUUGAGUGAAUUAAAGAGAGCUUUGACGUAAAUUACUUUU
..((((.....((((((((((((((....))))).(((((.(((((......))))).)))))....)))))))))((((((....)))))).))))......... ( -21.90)
>DroEre_CAF1 57332 105 - 1
AAUUACACUUUUUCACUCGAUUUUAAUCCUGGAAAUGCUGGA-UUUUCCCGCGAAAUACAGCAAACUUUGAGUGAAUUAAAGAGAGCUUUGACGUAAAUUACUUUU
..((((.....((((((((((((((....))))).(((((..-.((((....))))..)))))....)))))))))((((((....)))))).))))......... ( -23.20)
>DroYak_CAF1 53072 106 - 1
AAUUACACUUUUUCACUCGAUUUUAAUCCUGGAAAUGCUGAAAUAUUCCCCCGAAAUACAGCGAACUCUGAGUGAAUUAAAGACAGCUUUGACGUAAAUUACUUUU
..((((.....((((((((((....)))..(((..(((((.....(((....)))...)))))...))))))))))((((((....)))))).))))......... ( -18.20)
>consensus
AAUUACACUUUUUCGCUCGAUUUUAAUCCUGGAAAUGCUGAAUUUUUCCCGUGAAAUACAGCGAACUUUGAGUGAAUUAAAGAGAGCUUUGACGUAAAUUACUUUU
..((((.....((((((((((((((....))))).(((((.(((((......))))).)))))....)))))))))((((((....)))))).))))......... (-19.40 = -19.68 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:39 2006