Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,688,002 – 2,688,097 |
Length | 95 |
Max. P | 0.518235 |
Location | 2,688,002 – 2,688,097 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.53 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -16.44 |
Energy contribution | -17.00 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.25 |
Structure conservation index | 0.85 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2688002 95 - 23771897 AUUGUUCCAUUCAAGAAAGCUAUCCCCGAUUUUAAGUUAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACAUCCGCAGAUAGCGAAAAAC ..................((((((..((((..(((((((((..(((..(.....)..)))..))).))))))...)).))..))))))....... ( -18.50) >DroSec_CAF1 49057 95 - 1 AUUUCUCCAUUCAAGAAAGCUAUCCACGAUUUUAAGUCAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC .(((((.......)))))((((((...(((.....)))........(((....(((((((((....))))).))))...)))))))))....... ( -19.90) >DroSim_CAF1 47878 95 - 1 AUUGUUCCAUUCAAGAAAGCUAUCCACGAUUUUAAGUCAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC ..................((((((...(((.....)))........(((....(((((((((....))))).))))...)))))))))....... ( -18.70) >DroEre_CAF1 53893 95 - 1 AUUGCUCCAUUCAAGAACGCUAUCCCCAAAUUGAAGUUAGCCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC .................(((((((.......((((((((((..(((..(.....)..)))..))).))))).))........)))))))...... ( -19.76) >DroYak_CAF1 49591 95 - 1 AUUGCUCCAUCCAAGAAAGCUAUCCCCGAUUUUAAGUUAGCCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC .(((((..(((((((((.((((...............)))).))))))...(((((((((((....))))).))))...)).))))))))..... ( -19.66) >consensus AUUGCUCCAUUCAAGAAAGCUAUCCCCGAUUUUAAGUUAGUCUUUUUGCCCGCAGUGAAGUUGCUCAACUUACACUUCCGCAGAUAGCGAAAAAC ..................((((((..((....(((((((((..(((..(.....)..)))..))).))))))......))..))))))....... (-16.44 = -17.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006