Locus 884

Sequence ID 3L_DroMel_CAF1
Location 2,683,509 – 2,683,609
Length 100
Max. P 0.777039
window1357

overview

Window 7

Location 2,683,509 – 2,683,609
Length 100
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 93.14
Mean single sequence MFE -19.36
Consensus MFE -16.96
Energy contribution -16.56
Covariance contribution -0.40
Combinations/Pair 1.08
Mean z-score -1.34
Structure conservation index 0.88
SVM decision value 0.55
SVM RNA-class probability 0.777039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2683509 100 - 23771897
UUGUGUUGUAAAAUGUUUUAUGACACCUAA-----ACAACUUUCGUGAAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCAAGCCGUGCUACUCGAAAACA
..((((..((((....))))..))))....-----.....(((((.(.((((.((.(((((...((......)).....))))).))..).))).).)))))... ( -19.60)
>DroSec_CAF1 44622 100 - 1
UUGUGUUGUAAAAUGUUUUAUGACACCUAA-----ACAACUUUCGUGAAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCAAGCCCUGCUACUUGAAAACA
..((((..((((....))))..))))....-----.....(((((.(.(((..((.(((((...((......)).....))))).))....))).).)))))... ( -17.20)
>DroSim_CAF1 43195 100 - 1
UUGUGUUGUAAAAUGUUUUAUGACACCUAA-----ACAACUUUCGUGAAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCAAGCCCUGCUACUUGAAAACA
..((((..((((....))))..))))....-----.....(((((.(.(((..((.(((((...((......)).....))))).))....))).).)))))... ( -17.20)
>DroEre_CAF1 49481 105 - 1
UUGUGUUGUAAAAUAUUUUAUGACACCUAAAGACCACAACUUUUGUGAAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCUAGCCCAGCUACUUGAAAACA
..((((..((((....))))..))))...(((..((((.....)))).(((..((((((((...((......)).....))))))))....))).)))....... ( -21.40)
>DroYak_CAF1 44948 105 - 1
UUGUGUUGUAAAAUAUUUUAUGACACCUUAGCACCACAACUUUUGUGCAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCAAGCCCGGCUACUUGAAAACA
..((((..((((....))))..))))....((((..........))))((((.((.(((((...((......)).....))))).))...))))........... ( -21.40)
>consensus
UUGUGUUGUAAAAUGUUUUAUGACACCUAA_____ACAACUUUCGUGAAGCCCCUAGAGAUUUUACGUACAAGUCAUUCAUCUCAAGCCCUGCUACUUGAAAACA
..((((..((((....))))..))))..............(((((.(.(((..((.(((((...((......)).....))))).))....))).).)))))... (-16.96 = -16.56 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:31 2006