Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,679,282 – 2,679,372 |
Length | 90 |
Max. P | 0.823017 |
Location | 2,679,282 – 2,679,372 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.73 |
Mean single sequence MFE | -17.50 |
Consensus MFE | -12.51 |
Energy contribution | -13.01 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.71 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2679282 90 + 23771897 CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCC--AC--------------UCCUCUCAACCAG ....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30) >DroSec_CAF1 40332 90 + 1 CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCA--AC--------------UCCUCCCACCCAG ....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30) >DroSim_CAF1 38947 90 + 1 CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCA--AC--------------UCCAUCCACCCAG ....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30) >DroEre_CAF1 41322 102 + 1 CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCCAC----CUCCA--AC-CGUCC-CUCCAACUCCGCCCACCCGG ....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..-.....-........(((......))) ( -16.40) >DroYak_CAF1 40628 93 + 1 CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCCAC----CUUCA--AC-CGACCCCCCCAACUCC---------- ....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..-................---------- ( -15.30) >DroAna_CAF1 39611 105 + 1 GAACGACCUCAUGAACUUUUGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUCCUGCCAGGCUCGCGCUGGCUCUCCAUCAGGACGCCUCC-CUCUCACACUGGCUAC---- (.(((((....((((..((((((..........))))))))))..))))).).(((((((....)).(((..(((....))).)))...-........)))))...---- ( -27.40) >consensus CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC____CUUCA__AC______________UCCGCCCACCCAG ....((((..((((..........(((((...))))).........))))...))))..................................................... (-12.51 = -13.01 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:30 2006