Locus 883

Sequence ID 3L_DroMel_CAF1
Location 2,679,282 – 2,679,372
Length 90
Max. P 0.823017
window1356

overview

Window 6

Location 2,679,282 – 2,679,372
Length 90
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 76.73
Mean single sequence MFE -17.50
Consensus MFE -12.51
Energy contribution -13.01
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.71
SVM decision value 0.69
SVM RNA-class probability 0.823017
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2679282 90 + 23771897
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCC--AC--------------UCCUCUCAACCAG
....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30)
>DroSec_CAF1 40332 90 + 1
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCA--AC--------------UCCUCCCACCCAG
....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30)
>DroSim_CAF1 38947 90 + 1
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC----CUUCA--AC--------------UCCAUCCACCCAG
....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..--------------............. ( -15.30)
>DroEre_CAF1 41322 102 + 1
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCCAC----CUCCA--AC-CGUCC-CUCCAACUCCGCCCACCCGG
....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..-.....-........(((......))) ( -16.40)
>DroYak_CAF1 40628 93 + 1
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCCAC----CUUCA--AC-CGACCCCCCCAACUCC----------
....((((....((((..((....(((((...))))).......))..)))).)))).............----.....--..-................---------- ( -15.30)
>DroAna_CAF1 39611 105 + 1
GAACGACCUCAUGAACUUUUGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUCCUGCCAGGCUCGCGCUGGCUCUCCAUCAGGACGCCUCC-CUCUCACACUGGCUAC----
(.(((((....((((..((((((..........))))))))))..))))).).(((((((....)).(((..(((....))).)))...-........)))))...---- ( -27.40)
>consensus
CAACGGCCUCAUGAACUUUAGCAGCGCAUCUAAUGCGAAUUCAAUGUCGUUCUGGCCUUCUAACUUCUAC____CUUCA__AC______________UCCGCCCACCCAG
....((((..((((..........(((((...))))).........))))...))))..................................................... (-12.51 = -13.01 +   0.50) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:30 2006