| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,676,274 – 2,676,391 |
| Length | 117 |
| Max. P | 0.646530 |
| Location | 2,676,274 – 2,676,391 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.70 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -15.34 |
| Energy contribution | -16.15 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2676274 117 - 23771897 UGCUCUCGAAAGUUUUCCCCUCCAAACUUUCGCUUGUUCGCCAGGCCAA-AUUAAUUUCCUACCAGAUCGAUAAACUAUGAUUCUUCAUAGUUUCAAGUGACACACACACUUUUUGUG .......((((((((........))))))))(((((.....)))))...-.............((((.....(((((((((....))))))))).(((((.......))))))))).. ( -22.80) >DroSec_CAF1 37316 117 - 1 UGCUCUCGAAAGUUUUCCCCUCCAAAUUUUCGCUCGUUCUCCAGGCCAA-AUUAAUUUCCUCCCAGAUCGAUAAACUAUGAUUCUUCAUAGUUUCAAGUGACACACACACUUUUUGUG ......(((((((((........))))))))).(((.(((..(((....-........)))...))).))).(((((((((....))))))))).(((((.......)))))...... ( -20.10) >DroSim_CAF1 35933 117 - 1 UGCUCUCGAAAGUUUUCCCCUCCAAACUUUCGCUUGUUCGCCAGGCCAA-AUUAAUUUCCUCCCAGAUCGAUAAACUAUGAUUCUUCAUAGUUUCAAGUGACACACACACUUUUUGUG .......((((((((........))))))))(((((.....)))))...-.............((((.....(((((((((....))))))))).(((((.......))))))))).. ( -22.80) >DroEre_CAF1 38281 118 - 1 UGCUCUCGAAAGUUUUCCCCUCCAAACUUACGCUUGUUCGCCAGGCCAAAAUUAAUUUCCUCGCAGAUCAAUAAACUAUGAUUCUUCAUAGUUUCGAGUGACACACACACUUUUUGUG ((.((((((((((((........))))))..(((((.....)))))..............))).))).))..(((((((((....))))))))).(((((.......)))))...... ( -22.80) >DroYak_CAF1 37628 108 - 1 UGCUCUCGAAAGUUUUCCUCUGCAAACUUUCGCUUGUUCGCCAGGCCAA-AUUAAUUUUCUAGCAGAUCGAUAAACUAUGAUUCUUCAUAGUUUCAAGUGACAUACACA--------- ((((...((((((((........))))))))(((((.....)))))...-...........)))).......(((((((((....)))))))))...(((.....))).--------- ( -24.60) >DroAna_CAF1 36898 102 - 1 CUCACUAACAAGUUUU-UGCACAAAACUUUCCAUUGUUCGCCUACGGAA-AUUAAUUUUGCUCGUGAUCGAUAAACUAUGAUUCUUCAAAGUUUCAAGUAUCGC-------------- .((((....(((((((-.....))))))).......((((....)))).-.............)))).(((((((((.(((....))).)))).....))))).-------------- ( -13.50) >consensus UGCUCUCGAAAGUUUUCCCCUCCAAACUUUCGCUUGUUCGCCAGGCCAA_AUUAAUUUCCUCCCAGAUCGAUAAACUAUGAUUCUUCAUAGUUUCAAGUGACACACACACUUUUUGUG .......((((((((........))))))))(((((.....))))).....................(((..(((((((((....)))))))))....)))................. (-15.34 = -16.15 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:29 2006