Locus 881

Sequence ID 3L_DroMel_CAF1
Location 2,675,324 – 2,675,433
Length 109
Max. P 0.961717
window1354

overview

Window 4

Location 2,675,324 – 2,675,433
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 96.15
Mean single sequence MFE -23.40
Consensus MFE -20.10
Energy contribution -20.10
Covariance contribution -0.00
Combinations/Pair 1.09
Mean z-score -1.88
Structure conservation index 0.86
SVM decision value 1.53
SVM RNA-class probability 0.961717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2675324 109 + 23771897
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCAUUCCGGACCCAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAGCUGGGCGAAAAA
.....(((((......)))))..........(((((((..(((((((........(....)...((((.......))))..))))))).........)))))))..... ( -25.50)
>DroSec_CAF1 36343 109 + 1
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCACCCCGGACCCAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAGCUGGCCAAAAAA
.....(((((......))))).....(((...((((.(..(((((((........(....)...((((.......))))..)))))))....).)))))))........ ( -21.60)
>DroSim_CAF1 34959 109 + 1
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCACCCCGGACCCAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAGCUGGGCAAAAAA
.....(((((......)))))....((((...((((.(..(((((((........(....)...((((.......))))..)))))))....).))))))))....... ( -25.10)
>DroEre_CAF1 37309 109 + 1
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCACCCCGGACCGAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAACUAGGAGAAAAC
........(((.....((((((.............))))))((((((....(....).......((((.......))))..)))))).............)))...... ( -18.92)
>DroYak_CAF1 36649 109 + 1
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCACCCCGGACCCAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAGCUAGGCGAAAAC
.....(((((......)))))..........(((((((..(((((((........(....)...((((.......))))..))))))).........)))))))..... ( -25.90)
>consensus
AAAUAAAGUCCAACAAGAUUUAUAACCCACACGCUUAGAUCCUGUGCAGCACCCCGGACCCAAGGACAUCGCAAUUGUCACGCACAGGCAAACAAAGCUGGGCGAAAAA
.....(((((......)))))...........((((((..(((((((....(....).......((((.......))))..))))))).........))))))...... (-20.10 = -20.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:28 2006