Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 332,270 – 332,362 |
Length | 92 |
Max. P | 0.980422 |
Location | 332,270 – 332,362 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 83.64 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -24.19 |
Energy contribution | -25.39 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.28 |
Structure conservation index | 0.87 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 332270 92 + 23771897 AACCUGUU-UUCCACAGGCCUCCGUGUUCCAUGUUCCGUUUUAAAAUCCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAACCGGGGAAAUC ..(((((.-....))))).....(((.(((((.(((((.................))))).))))).)))...((((((....)))))).... ( -30.53) >DroSec_CAF1 4700 75 + 1 AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUU------------------CCCGGAGGGUGGACCGCAACUCCUCGAAACCGGGGAAAUC ..(((((......))))).....(((.(((((.((------------------(...))).))))).)))...((((((....)))))).... ( -25.00) >DroSim_CAF1 4698 75 + 1 AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUU------------------CCCGGAGGGUGGACCGCAACUCCUCGAAACCGGGGAAAUC ..(((((......))))).....(((.(((((.((------------------(...))).))))).)))...((((((....)))))).... ( -25.00) >DroEre_CAF1 4650 92 + 1 AACCUGUUUUUCCACGGGCUUCCGUGUUCCAUGUUCCGUUCUAAAAACCAUUUCCCGGAGGGUGGACCACAACUCCUCGUAAC-GGGGAAAUC ..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((...)-))))).... ( -28.43) >DroYak_CAF1 4851 92 + 1 AACCUGUUUUUCCACAGGGCUCAGUGUUCCAUGUUCCGUUUUAAAAGCCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAAC-GGGGAAAUC ..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((...)-))))).... ( -29.93) >consensus AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUUCCGUU_UAAAA_CCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAACCGGGGAAAUC ..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((....)))))).... (-24.19 = -25.39 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006