Locus 88

Sequence ID 3L_DroMel_CAF1
Location 332,270 – 332,362
Length 92
Max. P 0.980422
window124

overview

Window 4

Location 332,270 – 332,362
Length 92
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 83.64
Mean single sequence MFE -27.78
Consensus MFE -24.19
Energy contribution -25.39
Covariance contribution 1.20
Combinations/Pair 1.08
Mean z-score -2.28
Structure conservation index 0.87
SVM decision value 1.86
SVM RNA-class probability 0.980422
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 332270 92 + 23771897
AACCUGUU-UUCCACAGGCCUCCGUGUUCCAUGUUCCGUUUUAAAAUCCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAACCGGGGAAAUC
..(((((.-....))))).....(((.(((((.(((((.................))))).))))).)))...((((((....)))))).... ( -30.53)
>DroSec_CAF1 4700 75 + 1
AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUU------------------CCCGGAGGGUGGACCGCAACUCCUCGAAACCGGGGAAAUC
..(((((......))))).....(((.(((((.((------------------(...))).))))).)))...((((((....)))))).... ( -25.00)
>DroSim_CAF1 4698 75 + 1
AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUU------------------CCCGGAGGGUGGACCGCAACUCCUCGAAACCGGGGAAAUC
..(((((......))))).....(((.(((((.((------------------(...))).))))).)))...((((((....)))))).... ( -25.00)
>DroEre_CAF1 4650 92 + 1
AACCUGUUUUUCCACGGGCUUCCGUGUUCCAUGUUCCGUUCUAAAAACCAUUUCCCGGAGGGUGGACCACAACUCCUCGUAAC-GGGGAAAUC
..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((...)-))))).... ( -28.43)
>DroYak_CAF1 4851 92 + 1
AACCUGUUUUUCCACAGGGCUCAGUGUUCCAUGUUCCGUUUUAAAAGCCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAAC-GGGGAAAUC
..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((...)-))))).... ( -29.93)
>consensus
AACCUGUUUUUCCACAGGCCUCCGUGUUCCAUGUUCCGUU_UAAAA_CCAUUUCCCGGAGGGUGGACCACAACUCCUCGAAACCGGGGAAAUC
..(((((......))))).....(((.(((((.(((((.................))))).))))).)))...((((((....)))))).... (-24.19 = -25.39 +   1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:02 2006