Locus 879

Sequence ID 3L_DroMel_CAF1
Location 2,668,236 – 2,668,339
Length 103
Max. P 0.500000
window1351

overview

Window 1

Location 2,668,236 – 2,668,339
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 92.36
Mean single sequence MFE -30.76
Consensus MFE -22.28
Energy contribution -22.32
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2668236 103 + 23771897
AGGAAAAGCGGAAAAGUUAGAGGUCAGCGCGCGG-GGCUAAGGAAAUGUGGAUAAAUAUUGGCGUAUCGCGCUGUUGGUUUGAUUUUCUGCAGCCGUAAAUCUU
.((....((((((((.(((((..(((((((((((-.(((((.................)))))...)))))).))))))))))))))))))..))......... ( -30.53)
>DroSec_CAF1 29341 103 + 1
AGGAAAAGCGGAAAGGUGAGAGGUCAGCGCGCGG-GGCUCAGAAAAGGUGGAUAAACAUUGGCGUAUCGCCCUGUGGGUUUGAUUUUCUGCAGCCGUAAAUCUU
((((...((((....((..(((((((((.(((((-(((........((((......))))........)))))))).).))))))))..))..))))...)))) ( -35.39)
>DroSim_CAF1 27914 103 + 1
AGGAAAAGCGGAAAGGUGAGAGGUCAGCGCGCGG-GGCUAAGAAAAUGUGGAUAAAUAUUGGCGUGUCGCGCUGUGGGUUUGAUUUUCUGCAGCCGUAAAUCUU
((((...((((....((..(((((((((.(((((-.((...((..((((.(((....))).)))).)))).))))).).))))))))..))..))))...)))) ( -31.10)
>DroEre_CAF1 29391 103 + 1
AGAAAAAGCGGAAAGGUGAGAGGUCAGCGCGCGG-GGCUAAGAAAAUGUGGAUAAAUAUUGGCGUAUUGGGCUGUGGGUUUGAUUUCCUGCAGCCGUAAAUCUU
.......((((....((..(((((((((.((((.-(.((((....((((.(((....))).)))).)))).))))).).))))))))..))..))))....... ( -29.50)
>DroYak_CAF1 28233 104 + 1
AGAAGAAGCGGAAAGGUGAGAGGUCAGCGGGCGGGGGCUAAGAAAAUGUGGAUAAAUAUUGGCGUAUCGAGCUGUGCGUUUGAUUUCCUGCAGCUGUAAAUCUU
.................((((...((((..(((((((........((((.(((....))).))))(((((((.....)))))))))))))).))))....)))) ( -27.30)
>consensus
AGGAAAAGCGGAAAGGUGAGAGGUCAGCGCGCGG_GGCUAAGAAAAUGUGGAUAAAUAUUGGCGUAUCGCGCUGUGGGUUUGAUUUUCUGCAGCCGUAAAUCUU
.......((((....((..(((((((((.(((((.......(..(((((......)))))..)........))))).).))))))))..))..))))....... (-22.28 = -22.32 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:25 2006