| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,664,978 – 2,665,073 |
| Length | 95 |
| Max. P | 0.677360 |
| Location | 2,664,978 – 2,665,073 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -17.54 |
| Energy contribution | -16.73 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2664978 95 - 23771897 --------------ACGCCAACGCCCUGAACAUAAAAUUUAACGUU-UGUCUGUCAACCUGGCCACUUUGGCUAAUUGAAAUUGAUGUUCAUGGGCGU--UGACUACAGC-AC--- --------------....(((((((((((((((.((.(((((.(.(-((.....))).)(((((.....))))).))))).)).))))))).))))))--))........-..--- ( -31.10) >DroVir_CAF1 30576 101 - 1 GAA------GU-GUCCGGCAACGCCCUGCGCAUAAAAUUUAACGUU-UGUCCGUCAG-CUGGCCACUUUGGUUAAUUGAAAUUGAUGUUUGUGGGCGA--GCACCAACAC-AC--- ...------((-((..(((..(((((.(((..........((((((-......((((-.(((((.....))))).))))....)))))))))))))).--)).)..))))-..--- ( -26.00) >DroPse_CAF1 31374 103 - 1 ------------GACCGCCAACGCCCUGAACACAAAGUUUAACGUU-UGUCUGUCAACCUGGCCACUUUGGCUAAUUGAAAUUGAUGUUCAUGGGCGUCAUGAAUACAGCCACACA ------------........(((((((((((((((.(.....)...-......((((..(((((.....))))).))))..))).)))))).)))))).................. ( -26.80) >DroGri_CAF1 28826 101 - 1 GAA------GU-GUCCGGCAACGCCCUGCGCAUAAAAUUUAACGUU-UCUCCGUCAA-CUGGCCACUUUGGUUAAUUGAAAUUGAUGUUUGUGGGCGG--CUACUAACUU-AC--- ..(------((-(.(((....)((((.(((..........((((((-......((((-.(((((.....))))).))))....)))))))))))))))--.)))).....-..--- ( -25.60) >DroWil_CAF1 28560 108 - 1 UCUCUCCUUCUGGCUGGCCAACGCCCUGUACAUAAAAUUUAACGUUUUGUCUGUCAACCUGGCCACUUUGGUUAAUUGAAAUUGAUGUUCGUGGGCGU--CAGCUACC------CA ...........((.((((..((((((((.(((((((((.....))))).....((((..(((((.....))))).)))).....)))).)).))))))--..)))).)------). ( -28.70) >DroMoj_CAF1 28394 101 - 1 GAA------GU-GUCCGGCUACGCCCAGCGCAUAAAAUUUAACGUU-UGUUCGUCAA-CUGGCCACUUUGGUUAAUUGAAAUUGAUGUUUGUGGGCGG--UUACUAACAC-AC--- ..(------((-(.(((.((((((.....)).........((((((-......((((-.(((((.....))))).))))....)))))).)))).)))--.)))).....-..--- ( -26.70) >consensus GAA______GU_GUCCGCCAACGCCCUGCACAUAAAAUUUAACGUU_UGUCCGUCAA_CUGGCCACUUUGGUUAAUUGAAAUUGAUGUUCGUGGGCGU__UGACUAACAC_AC___ .....................(((((((.((((.((.(((((((.......))).....(((((.....)))))..)))).)).)))).)).)))))................... (-17.54 = -16.73 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:24 2006