Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,663,904 – 2,664,007 |
Length | 103 |
Max. P | 0.544060 |
Location | 2,663,904 – 2,664,007 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -20.67 |
Energy contribution | -21.29 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.80 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544060 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2663904 103 + 23771897 ---CCUUUUUUUUCCUCCCACAUUCAAUGGCUGCACUGGCGGAAGCUGCCGCCAUUGUAAUUAAGUCAGUGCACAGAGAAAAA----------CCACCGAAAAGUGUCAACAAUUC ---...((((((((....(((((((((((((.(((...((....))))).))))))).))).......)))....))))))))----------.(((......))).......... ( -23.71) >DroSim_CAF1 23441 102 + 1 ---CCUUUU-UUUCCUCCCACAGUCAAUGGCUGCCCUGGCGGAAGCUGCCGCCAUUGUAAUUAAGUCAGUGCACGGAGAAAAA----------CCACCGAAAACUGUCAACAAUUC ---......-..............(((((((.((...(((....))))).))))))).......(.((((...(((.(.....----------.).)))...)))).)........ ( -26.80) >DroEre_CAF1 25039 100 + 1 ---CCUUUU-UUUCCACCCGUAUUCAAUGGCUGC-CUGGCGGAAGCUGCCGCCAUUGUAAUUAAGUCAGUGCACGGAGAAAAA----------CCACUGC-AACUAUCAACAAUUC ---..((((-(((((....((((((((((((.((-..(((....))))).)))))))..........)))))..)))))))))----------.......-............... ( -26.10) >DroYak_CAF1 23785 115 + 1 ACCCAUUUU-UUUCUUCCCGUAUUCAAUGGCUGCCCUGGCGGAAGCUGCCGCCAUUGUAAUUAAGUCAGUGCACGGAGAAAAACUGAGAAAAACCGCCGAAAACUGUCAACAUUUC .....((((-(((((((((((...(((((((.((...(((....))))).))))))).......((....)))))).))).....))))))))....................... ( -27.10) >consensus ___CCUUUU_UUUCCUCCCACAUUCAAUGGCUGCCCUGGCGGAAGCUGCCGCCAUUGUAAUUAAGUCAGUGCACGGAGAAAAA__________CCACCGAAAACUGUCAACAAUUC ........................(((((((.((...(((....))))).))))))).......(.((((...(((.(................).)))...)))).)........ (-20.67 = -21.29 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:23 2006