Locus 8764

Sequence ID 3L_DroMel_CAF1
Location 23,172,668 – 23,172,766
Length 98
Max. P 0.939813
window14340

overview

Window 0

Location 23,172,668 – 23,172,766
Length 98
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.21
Mean single sequence MFE -27.49
Consensus MFE -22.65
Energy contribution -23.39
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -1.97
Structure conservation index 0.82
SVM decision value 1.28
SVM RNA-class probability 0.939813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 23172668 98 - 23771897
UGUAUAUUGCUGGUGGCUUCCAUUCAACUAAUCCUUCUGAGUAAAUUGUGGCUUUAGUUGCAAGAGUCACUUCGAAGUUACCAUCAGCACUACAUGAU----------------------
((((...(((((((((((((.(((((...........))))).....((((((((.......))))))))...))))...))))))))).))))....---------------------- ( -27.30)
>DroWil_CAF1 23679 112 - 1
UGUAUAUAGCGGGCGGUUUCCAUUCAACUAAUCCUUCAGAGUAAAUUGUGGCUUUUGUCGCAAGAGUCACUUCGAAGUUACCGUCGGCACUACACAGUUUAAU-GUAGUUU-------UA
........((.((((((................((((..(((.(.(((((((....)))))))...).)))..))))..)))))).))((((((........)-)))))..-------.. ( -30.57)
>DroMoj_CAF1 10998 120 - 1
UGUAUAUUGCUGGUGGUUUCCAUUCAACUAAUCCUUCAGAGUAAAUUGUAGCUUUUGUUGCAAGAGUCACUUCGAAGUUACCAUCGGCACUACACAAUAUCAUUAUUUGUUUUGUUUGUU
(((.((.((((((((((................((((..(((.(.(((((((....)))))))...).)))..))))..)))))))))).)).)))........................ ( -28.37)
>DroPer_CAF1 42743 98 - 1
UGUAUAUAGCUGGCGGCUUCCAUUCGACUAAUCCUUCAGAGUAAAUUGUGGCUUUUGUUGCAAGAGUCACUUCGAAGUUACCAUCAGCACUACAUGAU----------------------
((((....(((((..(((((.((((((........)).)))).....((((((((((...))))))))))...)))))..))...)))..))))....---------------------- ( -23.70)
>consensus
UGUAUAUAGCUGGCGGCUUCCAUUCAACUAAUCCUUCAGAGUAAAUUGUGGCUUUUGUUGCAAGAGUCACUUCGAAGUUACCAUCAGCACUACACAAU______________________
((((...((((((((((................((((..(((.(.(((((((....)))))))...).)))..))))..)))))))))).)))).......................... (-22.65 = -23.39 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:56 2006