Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,967,530 – 22,967,627 |
Length | 97 |
Max. P | 0.879093 |
Location | 22,967,530 – 22,967,627 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -20.27 |
Consensus MFE | -15.32 |
Energy contribution | -15.66 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.74 |
Structure conservation index | 0.76 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22967530 97 + 23771897 CAUUUAAAACUUACAAUUAUGGCUCCAAAUCUAACUCGAGUGCUCCACAAACAGCAGCGCCA------GAGCAUUCGAAAGUCAAGAACGCCACAAAAAUCUG ...................((((............((((((((((.................------))))))))))..((.....)))))).......... ( -18.23) >DroSim_CAF1 2240 97 + 1 CAUUCAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCACAAACAGCAGCGCCA------GAGCAUUCGAAGGUCAAGAACGCCACAGAAAUCAG ................(((((........((((((.(((((((((.................------)))))))))...))).)))......)))))..... ( -21.17) >DroEre_CAF1 3570 88 + 1 CCUCUAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCUAAAACAGCAGCGCCAGAGCCAGAGCAUUCGAAAGUCAAGAA--------------- ..(((...((((.((((((((((((....((......))(((((.((.....)).)))))..))))))))..))).).))))..))).--------------- ( -21.40) >consensus CAUUUAAAGCUUACAAUUCUGGCUCCAAAUCUGACACGAGUGCUCCACAAACAGCAGCGCCA______GAGCAUUCGAAAGUCAAGAACGCCACA_AAAUC_G .............................((((((.(((((((((........((...))........)))))))))...))).)))................ (-15.32 = -15.66 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:55 2006