| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,967,062 – 22,967,167 |
| Length | 105 |
| Max. P | 0.994553 |
| Location | 22,967,062 – 22,967,167 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.66 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -9.94 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.70 |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.994553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22967062 105 + 23771897 AACC----AAUGUUCAACCAUUACACACAAAUAUCCUUGACAAAAAUAUCAUAGUAAGUAGUGCAAUAGCACGCAUUGUUGUUCUUGCAUAUCCUUAUUCUCUUUUCAA ....----((((......))))..............................((((((..((((((.((((........)))).))))))...)))))).......... ( -11.30) >DroSim_CAF1 1772 105 + 1 AACC----AAACUUCAACCAUUACGCACAAAUAUUCUUGACAGAAAUAUUAUAGUAAGUAGUGCAAUAGCACACCUUGUUGUUAUUGCAUAUUCUUGUCCUCUUUUCAA ....----..............................(((((((.((((......))))(((((((((((........))))))))))).))).)))).......... ( -16.70) >DroEre_CAF1 3113 93 + 1 A-CAAUAAAAUAUUCG-------UUCACGAGU-UCCUUAACAGUACUACUAAAGUAAUU--UGCAAUAAC-----UUGUAGUUAUUGCAUACCCUUAUUCCUUCUUCAA .-...(((...(((((-------....)))))-...)))....((((.....))))...--(((((((((-----.....))))))))).................... ( -14.60) >consensus AACC____AAUAUUCAACCAUUACACACAAAUAUCCUUGACAGAAAUAUUAUAGUAAGUAGUGCAAUAGCAC_C_UUGUUGUUAUUGCAUAUCCUUAUUCUCUUUUCAA .....................................................(((((..(((((((((((........)))))))))))...)))))........... ( -9.94 = -10.83 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:55 2006