| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,965,966 – 22,966,080 |
| Length | 114 |
| Max. P | 0.830860 |
| Location | 22,965,966 – 22,966,080 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -29.77 |
| Consensus MFE | -19.82 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22965966 114 - 23771897 UCUUUUAAAAGGUUGUAUAUUUAUCUGCAUA------UACCUACCUCGUUCGGUGUCUCAACAGAAUCACUCUGGGCUGGCACUGUCGACAUGAUAUAUUCGCUUCUGCUGGAUGUAUCU ..........(((.((((((........)))------)))..)))(((..(((((((....((((.....))))....))))))).)))...(((((((((((....)).))))))))). ( -33.50) >DroSim_CAF1 564 114 - 1 UCUUCCAAAAGGUCGCAUAUUUAUCUGCAUA------UACCUACCUCAUUCGGUGUAUCAACAGUUCCGCACUGGGCGGGCACUGUCGACAUGAUACAUUCGCUUCUGCUGGAUGUAUCU ...........((((..........((.(((------((((..........)))))))))((((((((((.....))))).)))))))))..(((((((((((....)).))))))))). ( -35.90) >DroEre_CAF1 2357 120 - 1 UCUUCCACAACGUCGUGUCUUUAUUUGCAUAUUCGAAUACCUACCUCAUUCGGUGUCUGAACACUACUACACUGGGCUGGCCCCGCCGAUUUAAAAUAUUCGCUUCUGCUGGAGCUAUCU .(((((((......))).........(((.(..((((((...........((((((............))))))(((.(....)))).........))))))..).))).))))...... ( -19.90) >consensus UCUUCCAAAAGGUCGUAUAUUUAUCUGCAUA______UACCUACCUCAUUCGGUGUCUCAACAGUACCACACUGGGCUGGCACUGUCGACAUGAUAUAUUCGCUUCUGCUGGAUGUAUCU ...........((((((........)))......................(((((((....((((.....))))....)))))))..)))..(((((((((((....)).))))))))). (-19.82 = -20.50 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:54 2006