| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,955,192 – 22,955,298 |
| Length | 106 |
| Max. P | 0.816269 |
| Location | 22,955,192 – 22,955,298 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 86.45 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.23 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.816269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22955192 106 + 23771897 GCUCCGCACGAUUAGUUGAAAAAACUAAUGUUGAUGUGCAUCCAUGAUGCGAUGAAUUCAUUCAUCGGCAGCAAUAAGCUGCACCGCCCACAAUUUCUUUAUUUUA ((...((((((((((((.....))))))).....)))))..........(((((((....)))))))(((((.....)))))...))................... ( -27.20) >DroSec_CAF1 8434 98 + 1 UCUCCAGAAGAUUAGUUGAAAAAACGGAUGUUUAUGUGCAUCUAUGAUGCGAUGAAUUCUUUCAUCAGCAGCAA--------AUGUCCCACAAUUUCUUUAUUUUA ......(((((...(((.....)))((((((((.((((((((...)))))((((((....)))))).)))..))--------)))))).......)))))...... ( -24.60) >DroSim_CAF1 6863 98 + 1 UCUCCAGAAGAUUAGUUGAAAAAACUGAUGUUUAUGUGCAUCUAUGAUGCGAUGAAUUCUUUCAUCAGCAGCAA--------AUGUCCCACAAUUUCUUUAUUUUA ......(((((..((((.....))))(((((((.((((((((...)))))((((((....)))))).)))..))--------)))))........)))))...... ( -21.60) >consensus UCUCCAGAAGAUUAGUUGAAAAAACUGAUGUUUAUGUGCAUCUAUGAUGCGAUGAAUUCUUUCAUCAGCAGCAA________AUGUCCCACAAUUUCUUUAUUUUA ......(((.(((((((.....))))))).))).((((((((...)))))((((((....)))))).))).................................... (-18.23 = -18.23 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:53 2006