Locus 876

Sequence ID 3L_DroMel_CAF1
Location 2,653,521 – 2,653,611
Length 90
Max. P 0.853001
window1348

overview

Window 8

Location 2,653,521 – 2,653,611
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 81.80
Mean single sequence MFE -12.83
Consensus MFE -10.76
Energy contribution -10.73
Covariance contribution -0.03
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.84
SVM decision value 0.80
SVM RNA-class probability 0.853001
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2653521 90 - 23771897
CACAAUUUCCACUUCCACCUCUCUGUCAAUUUAUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUUACCUUUACUUUCGUCUCGAUUC------
.................................(((((.((((((.(((....))).)))))).))))).....................------ ( -11.20)
>DroVir_CAF1 17552 76 - 1
AACAAUUUCC-----CAUUUCUCUGUCAAUUUAUGAGCUUUUGUUUACGUUUCGCUUAGCAAAUGUUUACCUAUCCUUAC---------C------
..........-----..................((((..(..((..((((((.((...))))))))..))..)..)))).---------.------ (  -6.60)
>DroPse_CAF1 19239 95 - 1
UACAGUUUCCACUUUCACUUCUCUGUCAAUCUGUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUCACCUUUACAUUCU-CUUAUUUUCGCUGA
..((((..........((......))......((((((.((((((.(((....))).)))))).))))))...........-.........)))). ( -18.40)
>DroSim_CAF1 12587 90 - 1
CACAAUUUCCACUUCCACCUCUCUGUCAAUUUAUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUUACCUUUACUUUCGUCUCGAUUC------
.................................(((((.((((((.(((....))).)))))).))))).....................------ ( -11.20)
>DroEre_CAF1 14793 90 - 1
CACAAUUUCCACUUCCACCUCUCUGUCAAUUUAUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUUACCUUUACUUUCGUCUCGAUUC------
.................................(((((.((((((.(((....))).)))))).))))).....................------ ( -11.20)
>DroPer_CAF1 18760 95 - 1
UACAGUUUCCACUUUCACUUCUCUGUCAAUCUGUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUCACCUUUACAUUCU-CUUAUUUUCGCUGA
..((((..........((......))......((((((.((((((.(((....))).)))))).))))))...........-.........)))). ( -18.40)
>consensus
CACAAUUUCCACUUCCACCUCUCUGUCAAUUUAUGAGCUUUUGUUUGGCUUUCGCUUAGCAAAUGUUUACCUUUACUUUCG_CUCGAUUC______
.................................(((((.((((((.(((....))).)))))).)))))........................... (-10.76 = -10.73 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:22 2006