| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,948,639 – 22,948,743 |
| Length | 104 |
| Max. P | 0.820911 |
| Location | 22,948,639 – 22,948,743 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.07 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -15.37 |
| Energy contribution | -13.93 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22948639 104 + 23771897 AC----GCUCCGCUUAUGGAUUUUCAUACCGUCCAAGCAAUGCAACCGCAGGAGGUCGACAUUGCUUUUGAAGCAAUGCUGCUGCAUAAACACCAAAAUCCUCUACCG---- ..----((((((((..(((((.........))))))))..(((....))))))(((.(.(((((((.....)))))))).))))).......................---- ( -24.00) >DroGri_CAF1 424 112 + 1 GCAUCCAAUACACAAAUUGCUUUUCACACCGUGCAAGCCUUGCAGCCGCAUGAGGCAGAUGCCGCUUUCGAGGCGCUGCUGUUGCAAAAGCAGCAAGAACAAAGACAGCAAA ................(((((..((...........((((((.(((.((((.......)))).)))..))))))((((((........)))))).........)).))))). ( -32.90) >DroSec_CAF1 371 104 + 1 AC----GCUCCGCUCAUGGAUUUUCAUACCGUCCAAGCAAUGCAACCGCAGGAAGCCGACAUUGCUUUUGAAGCAAUGCUGCUGCAUAAACACCAAAAUCCUCUACCG---- ..----((((((((..(((((.........))))))))..(((....))))))(((.(.(((((((.....)))))))).))))).......................---- ( -25.60) >DroSim_CAF1 371 104 + 1 AC----GCUCCGCUCAUGGAUUUUCAUACCGUCCAAGCCAUGCAACCGCAGGAAGCCGACAUUGCUUUUGAAGCAAUGCUGCUGCAUAAACACCAAAAUCCUCUACCG---- ..----((((((((..(((((.........))))))))..(((....))))))(((.(.(((((((.....)))))))).))))).......................---- ( -24.70) >DroEre_CAF1 374 104 + 1 AC----GCUCCGCUUAUUGAUUUUCAUACCGUCCAAGCAUUGCAGCCGCAGGAGGCCGACAUUGCUUUUGAAGCGAUGCUGCUACAUAAACACCAAAAUCCCCUCCAG---- ..----.((((((((...(((.........))).))))..(((....)))))))((.(.(((((((.....)))))))).))..........................---- ( -20.90) >DroWil_CAF1 434 102 + 1 A--------AUAGAAAUAGUUUAUCAUACGGUGCAAGCUCUGCUGCCGCAUGAGGCUGAUGCCGCAUUCGAGGCGUUGCUGUUGCAAAAGCAACAAGAACUCCUCGAAAA-- .--------..............((((.(((((((.....))).)))).))))(((....)))...(((((((.(((..((((((....))))))..))).)))))))..-- ( -38.10) >consensus AC____GCUCCGCUAAUGGAUUUUCAUACCGUCCAAGCAAUGCAACCGCAGGAGGCCGACAUUGCUUUUGAAGCAAUGCUGCUGCAUAAACACCAAAAUCCUCUACAG____ .................(((((((................(((....))).(.(((.(.(((((((.....)))))))).))).).........)))))))........... (-15.37 = -13.93 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:52 2006