Locus 8758

Sequence ID 3L_DroMel_CAF1
Location 22,942,862 – 22,942,981
Length 119
Max. P 0.801630
window14334

overview

Window 4

Location 22,942,862 – 22,942,981
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -25.83
Consensus MFE -24.29
Energy contribution -22.97
Covariance contribution -1.32
Combinations/Pair 1.19
Mean z-score -1.75
Structure conservation index 0.94
SVM decision value 0.62
SVM RNA-class probability 0.801630
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22942862 119 - 23771897
UGUCAAUAUGUUGCAUAAAUAGAAAACAUGCAACAGAAAGCUGGAUAUGUUUUCAACAAAAUACCCGACAUGGACGGAAGGCAAU-UUAGUUUGAAUUUACUUCGAAAGAUUGUGUAAGU
..((((...(((((.......(((((((((...(((....)))..)))))))))..........(((.......)))...)))))-.....))))((((((.((....))....)))))) ( -26.80)
>DroSec_CAF1 139667 118 - 1
UGUUAAUUUGUUGCAUAAAUAGAAAACAUGCAACAGAAGGCGGGAUAAGUUUUCAACAAAAUACCAGGCA--GACGGAAGACAAUUUUAGCUUGAAUUUACUUGGAAACAUGGUGUAAGU
((((....((((((((...........))))))))((((((.......))))))))))......((((((--(((....).....))).))))).((((((.((....))....)))))) ( -25.00)
>DroSim_CAF1 129455 120 - 1
UGUCAAUUUGUUGCAUAAAUAGAAAACAUGCAACAGAAAACGGGAUAAGUUUUCAACAAAAUACCAGGCAUGGACGGAAGACAAUUUUAGCUUGAAUUUACUUGGAAACAUGGUGUAAGU
((((....((((((((...........))))))))((((((.......)))))).........(((....)))......))))......(((((....((((((....)).))))))))) ( -25.70)
>consensus
UGUCAAUUUGUUGCAUAAAUAGAAAACAUGCAACAGAAAGCGGGAUAAGUUUUCAACAAAAUACCAGGCAUGGACGGAAGACAAUUUUAGCUUGAAUUUACUUGGAAACAUGGUGUAAGU
((((....((((((((...........))))))))((((((.......))))))............))))....(....)...............((((((.((....))....)))))) (-24.29 = -22.97 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:51 2006