Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,936,991 – 22,937,082 |
Length | 91 |
Max. P | 0.658470 |
Location | 22,936,991 – 22,937,082 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -11.61 |
Energy contribution | -11.30 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.22 |
Mean z-score | -1.60 |
Structure conservation index | 0.57 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22936991 91 + 23771897 UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGAAC-------------------CUUAAAAAAG-GCAAAAGAAGAAAUCUUGAUGCGAUUGUUAAAACGGAAAAAACG-------GAU ..(((((((.........((((((((((((((.(-------------------(((....)))-)(....)......)))))).))))))))......)))))))...-------... ( -18.86) >DroSec_CAF1 134483 92 + 1 UAUUUUUCCACGCGAUAUGCAAUCGUUUAAGGAG-------------------CUCAAAAAAGAGCGAAAAAAGAAAUCUUGCCGCGAUUUUUUAAUCGGAAAAAACG-------AAU ..(((((((..(((((.....))))).....(((-------------------(((......)))).....((((((((.......))))))))..)))))))))...-------... ( -20.60) >DroSim_CAF1 124599 92 + 1 UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGGAC-------------------CUCAAAAAAGAGCGAAAAAAGAAAUCUUGACGCGAUUUUUUAAUCGGAAAAAACG-------GAU ..(((((((..(((((.....)))))........-------------------...((((((..(((....(((....)))..)))..))))))....)))))))...-------... ( -18.40) >DroEre_CAF1 137521 117 + 1 UCUUUUUCUUCGCGAAAUGCAAUCGCUUUGAGGUCCCUUCAAAAUUUUAUAUCGUUAAAAAAGUGCAAAAGAAGAAAACUUGAUGUGAUGGUUAGAUA-AAAGAAGCGGUACAUCGAU ...((((((((((((.......))))(((((((...)))))))...........................)))))))).(((((((.((.(((.....-.....))).))))))))). ( -23.50) >consensus UAUUUUUCCACGCGAUAUGCAAUCGUUUAGGGAC___________________CUCAAAAAAGAGCAAAAAAAGAAAUCUUGACGCGAUUGUUAAAUCGGAAAAAACG_______GAU ..(((((((..(((((.....)))))......................................(((....(((....)))..)))............)))))))............. (-11.61 = -11.30 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:50 2006