Locus 8756

Sequence ID 3L_DroMel_CAF1
Location 22,923,470 – 22,923,587
Length 117
Max. P 0.552559
window14332

overview

Window 2

Location 22,923,470 – 22,923,587
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -37.35
Consensus MFE -22.21
Energy contribution -23.65
Covariance contribution 1.44
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.59
SVM decision value 0.04
SVM RNA-class probability 0.552559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22923470 117 - 23771897
AUAGCUCGAGGAGCGUCAGCUGUUCUUUGGCAUACGAGAUAGGCGGCAAAACGACCUUUGCUUUAUCAUUAGUAAGGCAUGGGGAUGUUCCUGCUGUGGAGAAAUGAGCAGGUGUCC
...((((((((((((((.((((((.((((.....))))...)))))).......(((.((((((((.....)))))))).)))))))))))).((....))...)))))........ ( -39.20)
>DroSec_CAF1 127988 116 - 1
AUGGCUCAAGGAGCGUCAGCUGUUCUUUGGCAUUCAAGAUAGGCGGCAAAACGGCCU-UGCUUCAUCAUUAGUAAGGCAUGGGGAUGUUCCUGUUUUGGAGAAAUGAGCAGGUGUCC
...((((...))))(.((.((((((.((....(((((((((((.((((...((((((-((((........)))))))).))....)))))))))))))))..)).)))))).)).). ( -42.30)
>DroSim_CAF1 117986 116 - 1
AUGGCUCAAGGAGCGUCAGCUGUUCUUUAGCAUUCAAGAUAGGCGGCAAAACGGCCU-UGCUUCAUCAUUAGUAAGGCAUGGGGAUGUUCCUGUUUUGGAGAAAUGAGCAGGUGUCC
...((((...))))(.((.(((((((((....(((((((((((.((((...((((((-((((........)))))))).))....))))))))))))))).))).)))))).)).). ( -42.30)
>DroEre_CAF1 129798 89 - 1
AUGGCUCACGGAGCGUCAGCUGUUCUUUGGCCU------------------------UUGC----UCAUUAGUAAGGCAUGGGGAUGUUUCUGUUGUGAAGGGAUGAACAGGUGUCC
...((((...))))(.((.((((((....((((------------------------(.((----(....))))))))........((..((.......))..)))))))).)).). ( -25.60)
>consensus
AUGGCUCAAGGAGCGUCAGCUGUUCUUUGGCAUUCAAGAUAGGCGGCAAAACGGCCU_UGCUUCAUCAUUAGUAAGGCAUGGGGAUGUUCCUGUUGUGGAGAAAUGAGCAGGUGUCC
...((((((((((((((.((((.....)))).......................(((.(((((.((.....)).))))).))))))))))))............)))))........ (-22.21 = -23.65 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:49 2006