Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,912,574 – 22,912,669 |
Length | 95 |
Max. P | 0.514533 |
Location | 22,912,574 – 22,912,669 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -19.87 |
Consensus MFE | -15.52 |
Energy contribution | -15.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -1.31 |
Structure conservation index | 0.78 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22912574 95 + 23771897 U----UGCUGAAAAUGCAAUCUUGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUAUUGACAAAAGAGUUGAUAGUGGUCUGUAUUGUCAAA (----(((.......))))..((((((((.((((((((((.........)))))))))).((((..((......))..))))........)))))))). ( -26.80) >DroSec_CAF1 116333 82 + 1 UUGCCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUACUGACAAAAGACUGGAUAG----------------- ((((((((.......)).....))))))..((((((((((.........))))))))))((((((......))..))))...----------------- ( -18.50) >DroSim_CAF1 105326 82 + 1 UUUCCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUUGGUCCCUCUAUUGACAAAAGACUUGAUAG----------------- .....(((.......))).(((..(((((.((((((..((((....))))...))))))...)))).)...)))........----------------- ( -14.30) >consensus UU_CCUGCUGAAAAUGCAAUCUGGGCAAUUGGGAUUUAUUGAGACAUUAAAUGGAUCCCUCUAUUGACAAAAGACUUGAUAG_________________ .....(((.......))).(((..(((((.((((((((((.........))))))))))...)))).)...)))......................... (-15.52 = -15.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:47 2006