Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,903,170 – 22,903,274 |
Length | 104 |
Max. P | 0.778269 |
Location | 22,903,170 – 22,903,274 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.10 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -18.91 |
Energy contribution | -19.35 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.83 |
Structure conservation index | 0.74 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22903170 104 + 23771897 ACGACUAGUAUUGAGAACUGCGCAAAGAACAGUACGGAAACGGGACUAAGCGAAACUCUCAGCAA---------AUGUGUGGGUUGUAAAAUGCCAAAUUUUUACUAGUCACA ..((((((((((((((....(((.......(((.((....))..)))..)))....))))))...---------.......(((........))).......))))))))... ( -27.50) >DroSec_CAF1 90734 104 + 1 ACAACUAGUAUUGGGAACUGCGAAAAUAACGGUAAGGAAACUGGACUAAGCGUAACUCUCAGCAA---------AUGUCUGGGUUGUAAAACGCCAAAUUUUUACUAGUCACA ...(((((((((((((..((((.......((((......)))).......))))..))))))...---------.....((((((....))).)))......))))))).... ( -23.54) >DroSim_CAF1 95159 104 + 1 ACGACUAGUAUUGAGAACUGCGAAAAUAACGGUAAGGAAACGGGACUAAGCGUAACUCUCAGCAA---------AUGUGUGGGUUGUAAAACGCCAAAUUUGUACUAGUCACA ..(((((((..(((((..((((........(((..(....)...)))...))))..)))))((((---------((...((((((....))).))).)))))))))))))... ( -31.50) >DroEre_CAF1 102153 113 + 1 ACGACUUACAUUGGGAACUGCGAAAAGAACAGUAAGGAAACAGGACUUAGCGAAACUCUCAGCAAAUACCAAAAAUGUAUGGGCCGUAAAACGCCAAAUUUACGCUAGUCACG ..((((((((((.((...(((.....(...(((..(....)...)))...)((.....)).)))....))...))))))..(((.(((((........))))))))))))... ( -19.80) >consensus ACGACUAGUAUUGAGAACUGCGAAAAGAACAGUAAGGAAACGGGACUAAGCGAAACUCUCAGCAA_________AUGUGUGGGUUGUAAAACGCCAAAUUUUUACUAGUCACA ..((((((((((((((..((((........(((..(....)...)))...))))..))))))...................(((........))).......))))))))... (-18.91 = -19.35 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:47 2006