Locus 8753

Sequence ID 3L_DroMel_CAF1
Location 22,886,165 – 22,886,284
Length 119
Max. P 0.938920
window14329

overview

Window 9

Location 22,886,165 – 22,886,284
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.73
Mean single sequence MFE -27.18
Consensus MFE -8.56
Energy contribution -9.56
Covariance contribution 1.00
Combinations/Pair 1.21
Mean z-score -2.10
Structure conservation index 0.31
SVM decision value 1.27
SVM RNA-class probability 0.938920
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22886165 119 - 23771897
UCGCAUUAUUAAUAAUUUGUAUACCU-UUGCAGAAGGUACAUUGAUUUUAGUCAGAUAUUUGCCACACAGUAAAGGGGGCAUUUGCAACCGUAAAAGUUAUAAAUGCUCCAUCAAUGUGA
((((((((((((.((((.((.(((((-((...))))))).)).)))))))))..(((.(((((......))))).((((((((((.(((.......))).)))))))))))))))))))) ( -30.40)
>DroSec_CAF1 73921 116 - 1
UCGCAUUAUUAAUGAUUUGUAUACCUUUUGCAGAAGGUAUAUUGACUUAAGUCAGAUGUUUGCAACACAGUAC----GGCAUUUGCAACCGAAUAAGUUAUAAAUUGUUUAUCCAUGUGA
((((((....((..((((((((((((((....))))))))).(((((((.(((((((((((((......))).----))))))))..))....))))))))))))..)).....)))))) ( -27.90)
>DroSim_CAF1 78712 119 - 1
UCGCAUUAUUAAUGAUUUGUAUACCU-UUGCAGAAGGUAUAUUGACUUUAGGCAGAUGUUUGCAACACAGUAAUGGAGGCAUUUGCAACCGAAUAAGUUAUAAAUAGUUGAUCAAUGUGA
(((((((((((((.((((((((((((-((...))))))))).((((((...((((((((((.((.........)).))))))))))........))))))))))).)))))).))))))) ( -33.70)
>DroEre_CAF1 84831 94 - 1
UCGCAGUAUUAAUGAUUUGUAUACCC-UUGCAGAAGGUAUAUUAAUUUUAAUAAGGUUUUUGCAACACAGUAAAGGAA-GCAUUGCGAGCGUAUAA------------------------
((((((((((((.((((.(((((((.-........))))))).)))))))))....(((((((......)))))))..-..)))))))........------------------------ ( -19.70)
>DroYak_CAF1 95995 112 - 1
UCGCAUUAUUAAUGAUUUGUCUAUC-----CAGAGGGUAUAUUGAUUUUGGUCAGAUGUUUGCAACAUAGUAAAGGAU-CAUUUGCGAUCGUAUAAGGUGUAUAU--UUGAUCAAUUUCA
.....................((((-----(...)))))...(((..((((((((((((.....((((..((.(.(((-(......)))).).))..))))))))--))))))))..))) ( -24.20)
>consensus
UCGCAUUAUUAAUGAUUUGUAUACCU_UUGCAGAAGGUAUAUUGAUUUUAGUCAGAUGUUUGCAACACAGUAAAGGAGGCAUUUGCAACCGUAUAAGUUAUAAAU__UUGAUCAAUGUGA
..(((..(((((.((((.((((((((........)))))))).))))))))).......((((......))))..........))).................................. ( -8.56 =  -9.56 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:46 2006