| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,874,099 – 22,874,217 |
| Length | 118 |
| Max. P | 0.749094 |
| Location | 22,874,099 – 22,874,217 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 89.20 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -22.14 |
| Energy contribution | -21.37 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22874099 118 - 23771897 CUACAUAAAAAUUUACACAAAUAUGUAUUUAUCACUGCGAAAGACAGUUUCUAUUUAUUAAAAUAAUAGAGAAACAACGGAAGUGUGUUUCGCGAAUUCUUUCAAUAUGUUUUAAAAC ..................((((((((..........((((((.((.((((((..((((....))))...)))))).((....)))).))))))(((....))).))))))))...... ( -24.50) >DroSec_CAF1 62164 116 - 1 CUACAUAAAAAUUGACACACACACGUAUUUAUCACUGCGGAAGACAGUUUCUAUUUACUGAUAUGAUAGGGAGA-AACGGAAGUGUGUUCCGCGAAUACUUUCAAUAUGUUUUAGAA- ......................(((((((.......((((((.((..(..(((((.........)))))..)..-.((....)))).))))))(((....)))))))))).......- ( -24.60) >DroSim_CAF1 66792 116 - 1 CUACAUAAAAAUUUACACACAUACGUAUUUAUCACUGCGGAAGACAGUUUCUAAUUACUGAUAUGAUAGGGAGA-AACGGAAGUGUGUUCCGCGAAUAUUUUCAAUAUGAUUUAGAA- .......................((((((.......((((((.(((((((((..((((......).)))..)))-))).....))).))))))(((....)))))))))........- ( -23.00) >consensus CUACAUAAAAAUUUACACACAUACGUAUUUAUCACUGCGGAAGACAGUUUCUAUUUACUGAUAUGAUAGGGAGA_AACGGAAGUGUGUUCCGCGAAUACUUUCAAUAUGUUUUAGAA_ .......................((((((.......((((((.((..((((((((.........))))))))....((....)))).))))))(((....)))))))))......... (-22.14 = -21.37 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:44 2006