| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,862,395 – 22,862,509 |
| Length | 114 |
| Max. P | 0.576799 |
| Location | 22,862,395 – 22,862,509 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.94 |
| Mean single sequence MFE | -36.74 |
| Consensus MFE | -23.14 |
| Energy contribution | -24.31 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22862395 114 - 23771897 GCGACGUCCUAGGGCACUCCCAUCGCACACUCUACACGAUGGGGCU----UUUCAGCCUUAUCGGGCCAUUUGCGAUGCCAGGU--GGCUCCUUGAGAUUUCCAAGCCAAAUUUCGAAAC ((.(((((....))).((..(((((((.......(.((((((((((----....)))))))))))......)))))))..))))--.))...(((((((((.......)))))))))... ( -37.62) >DroSec_CAF1 50627 114 - 1 ACGACGUCCCAGGGCACUCCCGUCGCACACUCUGCACGAUGGGGCU----UUUCAGCCUUAUCGGGCCAUUUGCGAUGCCAGGU--GGCUCCUUGAGAUUUCCAAGCCAAAUUUCGAAAC ..((.(((.(((((((((..(((((((......((.((((((((((----....)))))))))).))....)))))))...)))--)...))))).))).)).................. ( -38.30) >DroSim_CAF1 51954 115 - 1 ACGACGUCCCAGGGCACUCCCGUCGCACACUCUGCACGAUGGGGCU----UUUCAGCCUUAUCGGGCCAUUUGCGAUGCCAGGG-GGGGUCCUUGAGAUUUCCAAGCCAAAUUUCGAAAC ..(((.((((..((((......(((((......((.((((((((((----....)))))))))).))....)))))))))..))-)).))).(((((((((.......)))))))))... ( -45.30) >DroEre_CAF1 55485 105 - 1 ---------UAGGACACUCCCGUCGCACACUCCACACGAUGGGGCU----UUUCAGCCUUAUCGGGCCAUUUGCGAUUCCAGGU--GGCUCCUUGAGAUUUCCAAGCCAAAUCUCGAAAC ---------...(((......))).............(((((((((----....)))))))))((((((((((......)))))--))))).(((((((((.......)))))))))... ( -35.30) >DroYak_CAF1 51970 114 - 1 ACAACGUUCUAGGGCACUCCCGUCGCACACUCUAUACGAUGGGACU----UUUCAGUCUUAUCGGGCCAUUUGCGAUGCCAGGU--GGCUCCUUGAGAUUUCCAAACCAAAUUUCGAAAC ....((......((...((((((((...........))))))))..----....(((((((..((((((((((......)))))--)))))..)))))))......))......)).... ( -33.80) >DroPer_CAF1 50786 120 - 1 CAGACGAGCGAGCGUCCUGCCAUUCGAUACUCUUCACAAUCGAGGUCGCGCCGCCACCUUAUCGGGCCAUUUACGACGUCAAGGAGAGCUCCUCGAGAUUUCCAAACCAAAUUUCAAAAG .....(((.((((.((((.......((......))......((.((((....(((.........)))......)))).)).))))..)))))))(((((((.......)))))))..... ( -30.10) >consensus ACGACGUCCUAGGGCACUCCCGUCGCACACUCUACACGAUGGGGCU____UUUCAGCCUUAUCGGGCCAUUUGCGAUGCCAGGU__GGCUCCUUGAGAUUUCCAAGCCAAAUUUCGAAAC ...........(((((((..(((((((.........((((((((((........)))))))))).......)))))))...)))...)))).(((((((((.......)))))))))... (-23.14 = -24.31 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:42 2006