Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,857,760 – 22,857,853 |
Length | 93 |
Max. P | 0.973935 |
Location | 22,857,760 – 22,857,853 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 71.69 |
Mean single sequence MFE | -18.11 |
Consensus MFE | -10.47 |
Energy contribution | -9.70 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.33 |
Mean z-score | -1.99 |
Structure conservation index | 0.58 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22857760 93 + 23771897 AUUGCAGUCUCGUUUUAAUUGUUAUUAAAGCGAUUAUUACGGCGGUGUA-CUGCCUCUUUCUUGCUUUUAUGCUCCGGCUCCCAAUUUUCCUUC--------- ((((.((((((((((((((....)))))))))).......(((((....-)))))........((......))...))))..))))........--------- ( -20.60) >DroPse_CAF1 44797 101 + 1 AUUACAGUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGACGGGGUUUUUGUCUCUUUUGUGCCCU--UGCCCUUGCCCUCUAUCUCCAUUCCAUUCCGUC ..........(((((((((....)))))))))........((((((((...............)))).--.((....))....................)))) ( -14.56) >DroSec_CAF1 46098 93 + 1 AUUGCAGUUUCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUA-CUACCUCUUUCUUGCUUUUAUGCCCCGGCUCCCAAUUUUCCUUC--------- ...((....((((((((((....))))))))))......(((.((((((-..(.(........).)..)))))))))))...............--------- ( -18.60) >DroSim_CAF1 47458 93 + 1 AUUGCAGUUUCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUG-CUGCCUCUUUCUUGCUUUUAUGCUCCGGCUCCCAAUUUUCCUUC--------- ...((((..((((((((((....)))))))))).......(((((....-)))))......))))......((....))...............--------- ( -20.00) >DroEre_CAF1 50923 73 + 1 AUUGCACUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACAGCGGUGUA-CUGCCGUUU--UUGCUUUUUUGCGU-----------------U---------- ...(((....(((((((((....)))))))))........((((((...-..)))))).--.........)))..-----------------.---------- ( -15.80) >DroYak_CAF1 47656 75 + 1 AGUGCAGUUCCUUUUUAAUUGUUAUUAAAGCGAUUAUUAUAGGAGUGUA-CUGCCGUUU-UUUGCUUUCUUGCGU-----------------UC--------- ((((((.(((((...((((((((.....))))))))....)))))))))-)).......-...((......))..-----------------..--------- ( -19.10) >consensus AUUGCAGUUCCGUUUUAAUUGUAAUUAAAGCGAUUAUUACGGCGGUGUA_CUGCCUCUUUCUUGCUUUUAUGCCCCGGCUCCCAAUUUUCCUUC_________ ...((((..(((((.(((((((.......)))))))....))))).....)))).........((......)).............................. (-10.47 = -9.70 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:40 2006