Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,854,503 – 22,854,598 |
Length | 95 |
Max. P | 0.685145 |
Location | 22,854,503 – 22,854,598 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.96 |
Mean single sequence MFE | -16.28 |
Consensus MFE | -11.98 |
Energy contribution | -12.40 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.13 |
Mean z-score | -2.20 |
Structure conservation index | 0.74 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22854503 95 - 23771897 AGCUGCCCAAUUUUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCACCCACCACGGCAAAAAC ...((((...(((((((((((.(((((((..........)))))))-))))))))))).((((.....))))...............))))..... ( -20.50) >DroSec_CAF1 42652 91 - 1 AGCUGCCCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CCACGGCAAAAAC ...((((......((((((((.(((((((..........)))))))-))))))))....((((.....)))).......----....))))..... ( -17.90) >DroSim_CAF1 43871 91 - 1 AGCCGCUCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CCACGGCAAAAAC .((((........((((((((.(((((((..........)))))))-))))))))....((((.....)))).......----...))))...... ( -19.50) >DroEre_CAF1 47684 91 - 1 AGCUGCCCCAUUCUUUUCUGUUAGCCAUUAAUCAAAGCAAAUAGCU-GCAGGAGAAAACUAAUAUUUAAUUACCACUCA----CUACCGCAAAAAC ...(((.......((((((((.(((.(((..........))).)))-))))))))....((((.....)))).......----.....)))..... ( -10.10) >DroWil_CAF1 64723 82 - 1 -----GCUUUUUCGUUUCGGUUAGCUAUUAAUCAAAGCAAAUAGCUUGCUGGCAAAGAUAAAUAUUUAAUUGCCACUCG---------ACAAGAAG -----.((((((.(((..(((.(((((((..........))))))).)))(((((((((....))))..)))))....)---------)))))))) ( -16.90) >DroYak_CAF1 44550 91 - 1 AGCUACCCUAUUCUUUUCUGUAAGAUACUAAUCAAAGCAAAUAGCU-GCAGGAGAAAAGUAAUAUUUAACUACCACUCA----CUACGGCAAAAAC .(((.........((((((((..(((....)))..(((.....)))-))))))))..(((........)))........----....)))...... ( -12.80) >consensus AGCUGCCCAAUUCUUUUCUGUUAGCUAUUAAUCAAAGCAAAUAGCU_GCAGGAGAAAACUAAUAUUUAAUUACCACUCA____CCACGGCAAAAAC .............((((((((.(((((((..........))))))).))))))))......................................... (-11.98 = -12.40 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:39 2006