| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,847,502 – 22,847,597 |
| Length | 95 |
| Max. P | 0.692802 |
| Location | 22,847,502 – 22,847,597 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -34.87 |
| Consensus MFE | -22.56 |
| Energy contribution | -22.95 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692802 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22847502 95 - 23771897 CAUCACUUCUUCCGGACAACCCC-CUGCCGGAGAACACGGCUCGUCCUUUAUAUAGAUGGAGGGCGAAGAGCUGCAUGAGCGCGAGCUGGACAGCA ..((..((((.((((.((.....-.))))))))))......(((((((((((....))))))))))).))((((..(.(((....))).).)))). ( -35.30) >DroPse_CAF1 33383 81 - 1 CGU--------C-------CGCAUUCUCUGGAGAGCCUGGCUCGUCCUUGAUGUAGAUGGAGGGCGAGGAGCUGCAGGAACGUGAGCUAGACAGCA .(.--------.-------(((.(((.(((.((..(((.((((.(((...........))))))).)))..)).)))))).)))..)......... ( -30.50) >DroSec_CAF1 35680 95 - 1 CAUCACUUCUUCCGGGCAACCGC-CUGCCGGAGAACACGGCUCGUCCUUUAUAUAGAUGGAGGGCGAAGAGCUGCAGGAGCGCGAGCUGGACAGCA .......((((((((....))).-..((((.......))))..(((((((((....))))))))))))))(((((...(((....))).).)))). ( -38.60) >DroSim_CAF1 36605 95 - 1 CAUCAUUUCUUCCGGGCAACCGC-CUGCCGGAGAACACGGCUCGUCCUUUAUAUAGAUGGAGGGCGAAGAGCUGCAGGAGCGCGAGCUGGACAGCA .......((((((((....))).-..((((.......))))..(((((((((....))))))))))))))(((((...(((....))).).)))). ( -38.60) >DroEre_CAF1 41234 95 - 1 CAUCCCUUCUUCCGGGCAACCCC-CCACCGGAGAGCACGGCUCGUCCUUUAUGUAGAUGGAGGGCGAAGAGCUGCAGGAGCGCGAGCUGGACAACA ..(((((((.(((((........-...)))))((((...))))(((((((((....)))))))))))))((((((......)).)))))))..... ( -33.70) >DroPer_CAF1 33259 81 - 1 CGU--------C-------CACAUUCUCUGGAGAGCCUGGCUCGUCCUUGAUGUAGAUGGAGGGCGAGGAGCUGCAGGAACGUGAGCUGGACAGCA .((--------(-------((..(((.(((.((..(((.((((.(((...........))))))).)))..)).))))))(....).))))).... ( -32.50) >consensus CAUCACUUCUUCCGGGCAACCCC_CCGCCGGAGAACACGGCUCGUCCUUUAUAUAGAUGGAGGGCGAAGAGCUGCAGGAGCGCGAGCUGGACAGCA ...........................(((.......))).(((((((((((....)))))))))))...(((((...(((....))).).)))). (-22.56 = -22.95 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:34 2006