Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,837,137 – 22,837,257 |
Length | 120 |
Max. P | 0.539359 |
Location | 22,837,137 – 22,837,257 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -37.45 |
Consensus MFE | -33.76 |
Energy contribution | -34.07 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.15 |
Mean z-score | -1.31 |
Structure conservation index | 0.90 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22837137 120 - 23771897 UAUUCGUUUGGCCACCUCAACUAAGCGGUGGUCCACUUUUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCGUCAAGGAGCACCAGAGAAUACAGUGG (((((...((((((((.(......).))))).)))...((((((((.((((......(((.....))).))))..((((((((((...))))))))))...)))))))))))))...... ( -44.60) >DroSec_CAF1 25716 120 - 1 UAUUCGUUUGGCCACCUCAACCAAGUGGUAUUCCACUUUUUGAUGCAGCUGAAGAAAGUCUACGAGACGCGGCAGUUGACGGUGAUUGUUAUCAUCAAGGAGCACCAGAGAGUGCAGUGG ...........((((....(((....)))....(((((((((.((((((((..(...(((.....))).)..)))))...((((((....)))))).....))).)))))))))..)))) ( -35.30) >DroSim_CAF1 25183 120 - 1 UAUUCGUUUGGCCACCUCAACUAAAUGAUAGUCCACUUCUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAGUUGACGGUGAUUGUUACCAUCAAGGAGCACCAGAGAAUGCAGUGG ...((((((((.........))))))))....((((((((((((((.((((......(((.....))).))))..((((.(((((...))))).))))...)))))).)))....))))) ( -35.70) >DroEre_CAF1 31733 120 - 1 AAUCCGUUUGGCCAACUCCACUAAGCGGCAGUCCACUUUUUUGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCGUCAAGGAGCACCAGAGAAUUAAUUGG ...((((((((.........))))))))((((....(((((.((((.((((......(((.....))).))))..((((((((((...))))))))))...)))).)))))....)))). ( -34.20) >consensus UAUUCGUUUGGCCACCUCAACUAAGCGGUAGUCCACUUUUUGGUGCAGCUGAAGAAAGUCUACGAGACGCGGCAAUUGACGGUGAUUGUUAUCAUCAAGGAGCACCAGAGAAUGCAGUGG ...((((((((.........))))))))....((((((((((((((.((((......(((.....))).))))..((((((((((...))))))))))...)))))))))).....)))) (-33.76 = -34.07 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:33 2006