Locus 8741

Sequence ID 3L_DroMel_CAF1
Location 22,835,613 – 22,835,727
Length 114
Max. P 0.534962
window14313

overview

Window 3

Location 22,835,613 – 22,835,727
Length 114
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 76.90
Mean single sequence MFE -21.60
Consensus MFE -11.83
Energy contribution -13.17
Covariance contribution 1.34
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.55
SVM decision value 0.00
SVM RNA-class probability 0.534962
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22835613 114 + 23771897
UCGGCAUGAUGACUCUCAUGUUUUUGCGUUAAAAUUUAUAUAAGUAAAUUUACAUACUUUUAACCUAUAAAACCGAUCCACUCACUAAUGCA-UCAGAGGCUUACUGUAGCCGAC
(((((((..(((..(((.((....(((((((((((((((....)))))))).......................((.....))..)))))))-.)))))..)))..)).))))). ( -22.90)
>DroSec_CAF1 24205 99 + 1
UUGGAAAGAG--UCAUCAUGUUUUUGCAUUUAAAUUUAUGUACGUAAAUUUACAUAAUUUUAAAUUAUAACA-------GCUCACUAGUGCAAGCAGAGACGUACUGC-------
..........--.....(((((((((((((((((.(((((((........))))))).))))))).......-------((........))..)))))))))).....------- ( -22.00)
>DroSim_CAF1 23663 99 + 1
UUGGAAAGAG--UCAUCAUGUUUUUGCAUUUAAAUUUAUGUACGUAAAUUUACAUAAUUUUAAAUUAUAACA-------GCUCACUAGUGCAAGCAGAGACUUACUGU-------
..........--.......(((((((((((((((.(((((((........))))))).))))))).......-------((........))..)))))))).......------- ( -19.90)
>consensus
UUGGAAAGAG__UCAUCAUGUUUUUGCAUUUAAAUUUAUGUACGUAAAUUUACAUAAUUUUAAAUUAUAACA_______GCUCACUAGUGCAAGCAGAGACUUACUGU_______
...................(((((((((((((((.(((((((........))))))).)))))))..............((........))..)))))))).............. (-11.83 = -13.17 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:30 2006