Locus 874

Sequence ID 3L_DroMel_CAF1
Location 2,638,466 – 2,638,557
Length 91
Max. P 0.624891
window1346

overview

Window 6

Location 2,638,466 – 2,638,557
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 79.85
Mean single sequence MFE -35.68
Consensus MFE -25.71
Energy contribution -25.22
Covariance contribution -0.49
Combinations/Pair 1.46
Mean z-score -1.22
Structure conservation index 0.72
SVM decision value 0.19
SVM RNA-class probability 0.624891
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2638466 91 - 23771897
UGUGCUACCCACCACCUGACCCUGCAAGCAAGGAGUGGGUGAUGCAGCCGGGAGCUCCUUGAGCGCAGUUUCAUCAGACGGUGG-UGUGGCU
...((((((((((..((((..((((...((((((((.(((......)))....))))))))...)))).....))))..)))))-.))))). ( -41.80)
>DroPse_CAF1 2906 91 - 1
AGUGCUCCCCACAAUCUGACCUUGUAGGCAUGGAGUGGGCGAAGCAGCUGGCAGCUCCUUUAGUACGGAGUCCUCA-AUGGUGCCAGUCGUC
..((((((((((..(.((.((.....)))).)..))))).).))))((((((((((((........)))))((...-..))))))))).... ( -33.40)
>DroSec_CAF1 2792 91 - 1
CGUGCUACCCACUACCUGGCCCUGCAAGCAAGGAGUGGGUGAUGCAGCCGGGAGCUCCUUGAGCGCAGCUUCAUCAGAUGGUGG-UGUGGCU
...(((((((((((.((((..((((...((((((((.(((......)))....))))))))...)))).....)))).))))))-.))))). ( -40.70)
>DroEre_CAF1 2813 91 - 1
UGUGCUGCCCACCACCUGGCCCUGCAAACAAGGAGUGGGUGAUGCCGCCGGAAGUUCCUUCAGCGCAGCUUCAUCAGACGGUGG-UGUGGUU
......((((((((((..(((((.......))).)).(((((.((.(((.((((...)))).).)).)).)))))....)))))-)).))). ( -33.90)
>DroYak_CAF1 2800 91 - 1
CGUGCUGCCCACCACCUGACCCUGCAAACAAGGAGUGGGUGAUGCAGCCGGGAGCUCCUUCAGCGCAGCUUCAUCAGACGGUGG-CGUUGUU
((.(((((....((((((..(((.......)))..))))))..)))))))((....))..((((((.(((((....)).))).)-))))).. ( -32.20)
>DroAna_CAF1 2835 91 - 1
GGUGCUACCCACGACUUGGCCUUGCAAGCAGGGAGUCGGCGAUGCAGCCGGUAGCUCCUUCAAAAUCGAAUCCUCAGCUGGUGG-AGUGGCC
...(((((((((((((...(((((....)))))))))(((......)))..(((((..(((......))).....)))))))))-.))))). ( -32.10)
>consensus
CGUGCUACCCACCACCUGACCCUGCAAGCAAGGAGUGGGUGAUGCAGCCGGGAGCUCCUUCAGCGCAGCUUCAUCAGACGGUGG_UGUGGCU
...((((((((((..((((..((((....(((((((.(((......)))....)))))))....)))).....))))..)))))..))))). (-25.71 = -25.22 +  -0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:20 2006