| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,823,857 – 22,823,947 |
| Length | 90 |
| Max. P | 0.543158 |
| Location | 22,823,857 – 22,823,947 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.02 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -10.48 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22823857 90 + 23771897 GCACCAGCGAAAGCUUA---UCGAUC-----CUCGGAAGAAUCAA--GGCCGACUUUCGCUUGGC-ACCCUCGAAAUCC----AAGCGAUCCAAUCUGCCGUCUC .....(((....)))..---..(((.-----.((....)))))..--(((.((...((((((((.-...........))----)))))).....)).)))..... ( -25.70) >DroSec_CAF1 11789 75 + 1 GCCCCAGCGAAAGCUUA---UCGAUC-----CUCGCAAGAAUCAA--GGCCGACUUUCGCUUGGC-ACCCUCGAAAUCC----AAGAGAU--------------- (((..((((((((....---(((..(-----.((....)).....--)..))))))))))).)))-...(((.......----..)))..--------------- ( -20.90) >DroSim_CAF1 10776 75 + 1 GCCCCAGCGAAAGCUUA---UCGAUC-----CUCGGAAGAAUCAA--GGCCGACUUUCGCUUGGC-ACCCUCGAAAUCC----AAGAGAU--------------- (((..((((((((....---(((..(-----.((....)).....--)..))))))))))).)))-...(((.......----..)))..--------------- ( -20.90) >DroEre_CAF1 16257 93 + 1 GCCUCAGUGAAAGCUUAUCAUCGAUC-----CUCGGAAGAAUCAA--GGCCAAUUUUCGCUUGGC-ACCCUCGAAUUCU----GAGCGAUCCAAUCUGCGGUCUC (((.((((((.......)))..((((-----(((((((.......--.(((((.......)))))-.........))))----))).))))....))).)))... ( -24.73) >DroYak_CAF1 18854 96 + 1 UCC-CAGCGAAAGCUCAUCAUCGGUC-----CUCGAAAGAAUCAA--GGCCGGCUUUUGCUUGCC-ACCCUCGAAAUCUAUCCAAUCGAUCCACUCUACAGCCUC ...-.(((....)))....((((((.-----.((....)).....--(((.(((....))).)))-..................))))))............... ( -20.80) >DroPer_CAF1 10570 96 + 1 GGAAAAGCGAAAGCCUC---GCGAUCGCUAUCUAGAAAGAAUCAAUAAGCCCACUUUCGCUGGGCUGUCCUUGAAAUCA----ACGAGACUC-UUCAGUGGUCU- ......((((.....))---))(((((((....(((...........((((((.......))))))(((((((....))----).).)))))-)..))))))).- ( -26.50) >consensus GCCCCAGCGAAAGCUUA___UCGAUC_____CUCGGAAGAAUCAA__GGCCGACUUUCGCUUGGC_ACCCUCGAAAUCC____AAGAGAUCC__UCUGC_GUCU_ .....(((....))).....((((........((....))........(((((.......))))).....))))............................... (-10.48 = -10.53 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:28 2006