| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,822,843 – 22,822,942 |
| Length | 99 |
| Max. P | 0.616687 |
| Location | 22,822,843 – 22,822,942 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.82 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -12.11 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22822843 99 + 23771897 CAUAUACAUAUUAAAUAUUUAUGUAAUUGGGAGUUGUUGUCCCAAUACAACAUGUCUGUACGGCUGAGCCCGAGCCUCGGUCAGUCCUACCGGCCCGAA ....((((((.........)))))).((((....((((((......)))))).(((.(((.((((((..(((.....))))))))).))).))))))). ( -27.60) >DroSec_CAF1 10738 77 + 1 CAAAUACAUGU---GUAUUUAUGUAAUUGGGAGUUCUUGUCCCAAUUCAACAUAU--GUAC-----------------GGUCAGUCCUACCGCCCCGAA ....(((((((---((.....((.((((((((.......))))))))))))))))--)))(-----------------(((.......))))....... ( -20.60) >DroSim_CAF1 9732 77 + 1 CAAAUACAUCU---GUAUUCAUGUAAUUGGGAGUUGUUGUCCCAAUUCAACAUAU--GUAC-----------------GGUCAGUCCUACCGCCCCGAA .........((---((((..((((((((((((.......))))))))..))))..--))))-----------------))................... ( -17.10) >consensus CAAAUACAUAU___GUAUUUAUGUAAUUGGGAGUUGUUGUCCCAAUUCAACAUAU__GUAC_________________GGUCAGUCCUACCGCCCCGAA ..............((((.(((((((((((((.......))))))))..)))))...)))).................(((.......)))........ (-12.11 = -13.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:27 2006