Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,806,043 – 22,806,142 |
Length | 99 |
Max. P | 0.619132 |
Location | 22,806,043 – 22,806,142 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -19.94 |
Consensus MFE | -11.60 |
Energy contribution | -13.00 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.58 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22806043 99 + 23771897 AUCGAUUCAUCAUUGUCGCACAAUGCUCACUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAA---------UGUUAAUAUGUUUUACCCAAAAACACCA (((((.....(((((.....))))).....)))))..((((((..(((.....))).))))))........---------........((((((.....))))))... ( -16.10) >DroSec_CAF1 68091 101 + 1 AUCGAU-------UGUGCGAUAAUGAUGAAUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA ...(((-------(((.((((........))))....((((((..(((.....))).))))))..........)))))).........((((((.....))))))... ( -16.70) >DroSim_CAF1 70957 108 + 1 AUCGAUUCAUCAUUGUCGCACAAUGAUGAAUCGAUAAAAAUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA (((((((((((((((.....)))))))))))))))..((((((((.....)))))))).................((......))...((((((.....))))))... ( -30.40) >DroEre_CAF1 71181 107 + 1 AUCGAUUCAUCAUUGCCGCACUAUGAAGAAUCGAAACAGUUUACUAUCCAGGUGAUUUGAACUAAGUUAAUGUACGAUC-UAUUUAUAUGUUUUACCCUAAAACACCA .(((((((.((((.........)))).)))))))................((((.((((...((((...(((((.....-....)))))..))))...)))).)))). ( -18.40) >DroYak_CAF1 70919 106 + 1 AUCGAUUCAUCAUUGUCGCACUAUGCAGAAUCGA--UAGAUUACUAUCCAGGUGAUUUGAACUAAUUUAAUGUACGAUCAUAUUUUGAUGUUUUACCCUAAAACACCA .(((((((..(((.(.....).)))..)))))))--(((((((((.....))))))))).................((((.....))))((((((...)))))).... ( -18.10) >consensus AUCGAUUCAUCAUUGUCGCACAAUGAUGAAUCGAUAAAGUUCACUAUCCAGGUGAUUUGAACUAAGUUAAAGAACGAUCAUAUUCACAUGUUUUACCCAAAAACACCA .(((((((..(((((.....)))))..)))))))......(((((.....))))).................................((((((.....))))))... (-11.60 = -13.00 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:25 2006