Locus 8734

Sequence ID 3L_DroMel_CAF1
Location 22,786,929 – 22,787,038
Length 109
Max. P 0.500000
window14304

overview

Window 4

Location 22,786,929 – 22,787,038
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 75.54
Mean single sequence MFE -42.37
Consensus MFE -26.23
Energy contribution -26.85
Covariance contribution 0.62
Combinations/Pair 1.57
Mean z-score -1.23
Structure conservation index 0.62
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22786929 109 - 23771897
GAGGAGUGUGCCAGUACCGGCGGCAUAUUAAGGCGGCUGGGGCAGACUGCUUUGCUGUCAGCGCGGAGCGAGUCAAUGACCUGGCUGACGCCGUCCAACUGUCUGCCGA
..((((((((((.((....)))))))))).((((((...((((.(((((((((((.......))))))).))))........(((....)))))))..)))))).)).. ( -44.10)
>DroSec_CAF1 50746 109 - 1
GAGGAGUAUGCCAGUACCGGCGGCAUAUUAAGGCAGCUGGAGCAGACUGCUUUGCUGUCAGGACGGAGCGAGUCAAUGACCUGGCUGACGCCGUCCAACUGUCUGCCGA
..((......)).....((((((((......((((((.(((((.....))))))))))).((((((.(..(((((......)))))..).))))))...)).)))))). ( -44.70)
>DroSim_CAF1 53086 109 - 1
GAGGAGUGUGCCAGUACCGGCGGCAUAUUAAGGCAGCUGGAGCAGACUGCUUUGCUGUCAGGGCGGAGCGAGUCAGUGACCUGGCUGACGCCGUCCAACUGUCUGCCGA
..((......)).....((((((((......((((((.(((((.....))))))))))).((((((.(..((((((....))))))..).))))))...)).)))))). ( -46.50)
>DroEre_CAF1 49831 109 - 1
GAGGAGUGUGCCAAUACCGGCGGCAUAUUACGGCAGCUGGAGCAGACCGCUCUGCUGUCAGCGCGGAGCGAGUCAAUGACCUGGCUGACGCCGUGCAAUUGUCUGCCCA
..((.((..(((......)))((((...(((((((((..(..(((((((((((((.......)))))))).)))..))..)..)))...))))))....)))).)))). ( -45.80)
>DroWil_CAF1 63991 109 - 1
GAAGUGCAUGCGACUAUCGUCGGUAUAAUAAGGCAACUGAGGCAAUCGAGUCCUUUGACAGCUUGGAGCGAGUCUCUUACGUGGCUAAUGCCUCAAAAUUGUCUACCAA
...((((..(((.....)))..))))....((((((.(((((((.....(((....)))((((.((((.....)))).....))))..)))))))...))))))..... ( -29.30)
>DroPer_CAF1 60731 109 - 1
GAAGAUCCGGCCGCCAUCGCCGGUCUGAUGAAGCUGCUCAAGCAGCCCGCGUCUCAGACCGUUCGCAGCGAGUCUAUGACCUGGCUGGUGCCCGGCAACAGUUCUCCGA
......((((.(((((..(((((((.((((..(((((....)))))...))))..(((((((.....))).))))..)))).)))))))).)))).............. ( -43.80)
>consensus
GAGGAGUGUGCCAGUACCGGCGGCAUAUUAAGGCAGCUGGAGCAGACUGCUUUGCUGUCAGCGCGGAGCGAGUCAAUGACCUGGCUGACGCCGUCCAACUGUCUGCCGA
....((((((((.........))))))))..((((((.(((((.....))))))))))).((((((.(..((((........))))..).))))))............. (-26.23 = -26.85 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:22 2006