| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,761,220 – 22,761,325 |
| Length | 105 |
| Max. P | 0.605890 |
| Location | 22,761,220 – 22,761,325 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 90.67 |
| Mean single sequence MFE | -31.90 |
| Consensus MFE | -25.78 |
| Energy contribution | -26.18 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22761220 105 - 23771897 UUCGCUAAAUUGCAUUUUCGCAGUCAUUUAAGGUAAUUGCAUUAGACUCGUUUGACAUGUUGCUUUGGGUCCAAAGCGGCGUGAGGCACAGUGGUAGUGGGAGGG (((((((.((((.......(((((.((.....)).))))).........((((..((((((((((((....)))))))))))))))).))))..))))))).... ( -30.60) >DroSec_CAF1 22818 105 - 1 UUCGCUAAAUUGCAUUUUUGCAGUCAUUUAAGGUAAUUGCAUUAGACUCGUUUGACACGCUGCUUUGGGUCCAAAGCGGCGUGAGCCACAGUGGCAGUGGGAGGG ((((((....((((....))))((((((...(((.......(((((....)))))((((((((((((....)))))))))))).)))..)))))))))))).... ( -38.80) >DroSim_CAF1 23719 105 - 1 UUCGCUAAAUUGCAUUUUUGCAGUCAUUUAAGGUAAUUGCAUUAGACUCGUUUGACAUGUUGCUUUGGGUCCAAAGCGGCGUGAGGCACAGUGGCAGUGGGAGGG ((((((....((((....))))((((((....((.......(((((....)))))((((((((((((....))))))))))))..))..)))))))))))).... ( -31.70) >DroEre_CAF1 22140 98 - 1 UUCGCUAAAUUGCAUUUUUGCAGUCAUUUAAAGUAAUUGCAUUAGACUCGUUUGACAUGUUGCUUUGAGUCCAGAGCGG-------CACAGUGGCGGUGGGAGGA ((((((....((((....))))((((((.............(((((....)))))..((((((((((....))))))))-------)).)))))))))))).... ( -25.70) >DroYak_CAF1 21854 105 - 1 UUCGCUAAAUUGCAUUUUUGCUGUCAUUUAAGGUAAUUGCAUUAGACUCGUUUGACAUGUUGCUUUGAGCCCAGAGCGGCAUCGGGCACAUUGGCGGUGGAAGGG ...((......)).((((..(((((((((((.((....)).)))))...((((((..((((((((((....))))))))))))))))....))))))..)))).. ( -32.70) >consensus UUCGCUAAAUUGCAUUUUUGCAGUCAUUUAAGGUAAUUGCAUUAGACUCGUUUGACAUGUUGCUUUGGGUCCAAAGCGGCGUGAGGCACAGUGGCAGUGGGAGGG ((((((....((((....))))((((((.............(((((....)))))((((((((((((....))))))))))))......)))))))))))).... (-25.78 = -26.18 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:16 2006