Locus 8730

Sequence ID 3L_DroMel_CAF1
Location 22,758,586 – 22,758,678
Length 92
Max. P 0.845294
window14297

overview

Window 7

Location 22,758,586 – 22,758,678
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.71
Mean single sequence MFE -24.88
Consensus MFE -21.82
Energy contribution -21.86
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.88
SVM decision value 0.77
SVM RNA-class probability 0.845294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22758586 92 + 23771897
AACGCGACUCUGAGUCCGAACCCGAAACGAGACUCAACGCGA----------CUCAACUUGACUCGCCUCUCAGCGAUGCCUCGUCGUCUGAACGACUUCUC
..(((.....((((((((.........)).))))))..((((----------.((.....)).))))......))).......(((((....)))))..... ( -24.40)
>DroSec_CAF1 20155 92 + 1
AACGCGACUCUGAGUCCGAACCCGAAACGAGACUCAACGCGA----------CUCAACUUGACUCGCCUCUCAGCGCUGCGUCGUCGUCUGAACGACUUCUC
.(((((.(.(((((((((.........)).)))))...((((----------.((.....)).)))).....)).).))))).(((((....)))))..... ( -25.10)
>DroSim_CAF1 20933 102 + 1
AACGCGACUCUGAGUCCGAACCCGAAACGAGACUCAACGCGACUCAAUGCGACUCAACUUGACUCGCCUCUCAGCGAUGCCUCGUCGUCUGAACGACUUCUC
..((((....((((((((.........)).)))))).)))).......((((.((.....)).))))...(((((((((...))))).)))).......... ( -28.00)
>DroEre_CAF1 19269 92 + 1
AACGCGAAUCUGAGUCCGAACCCGAAACGAGACUCAACGCGA----------CUCAACUUGACUCGCCUCUCAGCGAUGCCUCGUCGUCUGAACGACUUCUC
..(((.....((((((((.........)).))))))..((((----------.((.....)).))))......))).......(((((....)))))..... ( -24.40)
>DroYak_CAF1 19219 92 + 1
AACGCGAAUAUGAGUCCGAACACAAAACGAGACUCAACGCGA----------CUCAACUUGACUCGCCUCUCAGCGAUGCCUCGUUGUCUGAACGACUUCUC
..(((.....((((((((.........)).))))))..((((----------.((.....)).))))......))).......(((((....)))))..... ( -22.50)
>consensus
AACGCGACUCUGAGUCCGAACCCGAAACGAGACUCAACGCGA__________CUCAACUUGACUCGCCUCUCAGCGAUGCCUCGUCGUCUGAACGACUUCUC
..((((....((((((((.........)).)))))).))))......................((((......))))......(((((....)))))..... (-21.82 = -21.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:15 2006