Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,637,673 – 2,637,773 |
Length | 100 |
Max. P | 0.534345 |
Location | 2,637,673 – 2,637,773 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.24 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -17.76 |
Energy contribution | -18.10 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.31 |
Mean z-score | -1.62 |
Structure conservation index | 0.65 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2637673 100 + 23771897 GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUGUUUGCUGGUAACGCGGGUUUUAUGCCAAACAAACCCAUGCCCUGCAC ((..((((((((((((((..(((((...((........))..))---)))..))))))))..))).....((((((..........))))))..)))..)).. ( -29.20) >DroPse_CAF1 2074 103 + 1 GUCUGGCCCUCAAGCGUGUGGCUAAACAACAAGAGAAUGCCAUCGGCAACAAAGUGUUCGCCAACAAUUUGGGCUUUGCCGCCACCAAGCCUAUGCCCUGCAC ((..(((......((..(((((...............((((...)))).((((.((((....)))).))))(((...))))))))...))....)))..)).. ( -25.40) >DroSec_CAF1 1999 100 + 1 GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUUUUUGCUGGAAAUGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC (((.((((......)))).)))....((((............((---(((((.....)))))))......((((((.((.....))))))))....))))... ( -24.80) >DroSim_CAF1 2006 100 + 1 GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU---AGUAAAGUUUUUGCUGGUAAUGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC (((.((((......)))).)))....((((...........(((---(((((.....)))))))).....((((((.((.....))))))))....))))... ( -26.10) >DroEre_CAF1 2008 100 + 1 GUUUGGCUCUUAAACGCUCAGCUAAACAGGAUCCUAACCCAAUU---AGUAAAGUGUUUGCUGGAAACGCGGGUUUUGUGCCAAACAAACCCAUGCCCUGCAC ((..(((....(((((((..(((((...((........))..))---)))..)))))))((.(....)))((((((.((.....))))))))..)))..)).. ( -29.40) >DroYak_CAF1 2010 100 + 1 GUUUGGCUCUCAAACGCUCAGCUAAACAGGAUCUCAAUCCAAUU---AGUAAAGUGUUUACUGGAACCGUGAGCUUUGUGCCAAACAAACCCAUGCCCUGCAC (((((((...((((.(((((........((((....))))..((---(((((.....))))))).....))))))))).))))))).......(((...))). ( -28.00) >consensus GCUUGGCGCUCAAACGCUCAGCUAAACAGGAUCUCAACCCAAUU___AGUAAAGUGUUUGCUGGAAACGCGGGUUUUGUCCCAAACAAACCCAUGCCCUGCAC ((..(((...((((((((..(((.....((........)).......)))..))))))))..........(((.(((((.....))))))))..)))..)).. (-17.76 = -18.10 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:19 2006