Locus 8729

Sequence ID 3L_DroMel_CAF1
Location 22,755,404 – 22,755,499
Length 95
Max. P 0.879387
window14296

overview

Window 6

Location 22,755,404 – 22,755,499
Length 95
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 77.83
Mean single sequence MFE -22.91
Consensus MFE -21.28
Energy contribution -20.88
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -1.21
Structure conservation index 0.93
SVM decision value 0.91
SVM RNA-class probability 0.879387
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22755404 95 - 23771897
UACACGACA-------------CCGGAUAUUCACCCUGCACAAUAGUGCAA------UGCACAUGACGGAGACACGAGCGCAACACUGCAAGCUUCUCCAUUGGCAAUUAUCUG
.........-------------.((((((.......(((((....))))).------(((.((....(((((....((((((....)))..))))))))..)))))..)))))) ( -23.80)
>DroSec_CAF1 16917 90 - 1
------------------------GGAUAUUCACACUGCACAAUAGUGCAAUGCCAAUGCACAUGACGGAGACACGAGUGCAACUCUGCUAGCUUCUUCAUUGGCAAUCAGCUG
------------------------.(((........(((((....))))).((((((((........(....)..(((((((....)))..))))...)))))))))))..... ( -23.40)
>DroSim_CAF1 17750 90 - 1
------------------------GGAUAUUCACACUGCACAAUAGUGCAAUGCCAAUGCACAUGACGGAGACACGAGUGCAACUCUGCUAGCUUCUCCAUUGGCAAUCAGCUG
------------------------.(((........(((((....))))).(((((((.(....)..(((((..(....(((....)))..)..)))))))))))))))..... ( -23.90)
>DroEre_CAF1 15780 95 - 1
AACUCGACU-------------CCAUUAAUUCACACUGCACAAUAGUGCAU------UGCACAUGACGGAGACACGAGCGCAAAACUGCAAGCUUCUCCAUUGGCAAUCAGCUG
..((((.((-------------((.(((.....((.(((((....))))).------))....))).))))...)))).(((....)))..(((........)))......... ( -21.60)
>DroYak_CAF1 15776 108 - 1
AACACGACCACCAGAUAUACCACCAGAUUUUCACACUGCACAAUAGUGCAU------UGCACAUGACGGAGACACGAGCGCAAAACUGCAAGCUUCUCCAUUGGCAAUCAGCUG
...........(((........((((.......((.(((((....))))).------))........(((((....((((((....)))..)))))))).)))).......))) ( -21.86)
>consensus
_AC_CGAC______________CCGGAUAUUCACACUGCACAAUAGUGCAA______UGCACAUGACGGAGACACGAGCGCAACACUGCAAGCUUCUCCAUUGGCAAUCAGCUG
....................................(((.((((.(((((.......))))).....(((((....((((((....)))..)))))))))))))))........ (-21.28 = -20.88 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:14 2006