| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,754,181 – 22,754,284 |
| Length | 103 |
| Max. P | 0.929298 |
| Location | 22,754,181 – 22,754,284 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.64 |
| Mean single sequence MFE | -31.77 |
| Consensus MFE | -16.03 |
| Energy contribution | -14.80 |
| Covariance contribution | -1.23 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22754181 103 - 23771897 AGAUGCUGUUGCUCCGCCAAUGGAGCGCAACAAUUCACAAAUAGCAGCGGCGCGGCGGUAAAUGCGAAUAUGUGUGCACAUACUUGUGCAUCACAUGCAUUUG ((((((..((((.(((((......((((..(...............)..))))))))).....))))..(((((((((((....)))))).))))))))))). ( -35.46) >DroPse_CAF1 21327 97 - 1 AAAUGCUGUCGCUCUGCCAAUGGAGCGCAAUAAUUCACAAAUAGCAAAGGC--AACAGCAACGGCAAAGGCAACGGCAACGAC---GGCGGCA-CUGCAUUUG (((((((((((((.((((..((((.........))))......((....((--....))....))...)))).((....))..---)))))))-..)))))). ( -28.80) >DroSec_CAF1 15504 102 - 1 AGAUGCUGUUGCUCUGCCAAUGGAGCGCAACAACUCACAAAUAGCAGCG-CGCGGCGGUGAUGGCGAAUAUGUAUGCACAUACUUGUGCAUCGCAUGCAUUUG ((((((..((((((((((..(((((........))).))....((....-.)))))))....)))))..(((((((((((....))))))).)))))))))). ( -32.70) >DroSim_CAF1 15971 102 - 1 AGAUGCUGUUGCUCUGCCAAUGGAGCGCAACAACUCACAAAUAGCAGCG-CGCGGCGGCGAUGGCGAAUAUGUAUGCACAUACUUGUGCAUCGCAUGCAUUUG ...((((((.((.((((...(((((........))).))....)))).)-)))))))((((((((((.(((((....))))).)))).))))))......... ( -33.90) >DroAna_CAF1 14461 86 - 1 AAAUGCUGUCGCUCCGCCAAUGGAGCGCAAUAAUUCACAAAUAGCAACGG--CAACGGUGCUGGCAG---UGAA------------UGCCUCGCCUGCAUUUA ((((((((.(((((((....)))))))))...((((((...(((((.((.--...)).)))))...)---))))------------).........)))))). ( -33.60) >DroPer_CAF1 21712 97 - 1 AAAUGCUGUCGCUCUGCCAAUGGAGCGCAAUAAUUCACAAAUAGCAAAGGC--AACAGAAACGGCAAAGGCAACGGCAACGAC---GGCGGCA-CUGCAUUUG (((((((((((((.((((......((.................))...(..--..)......)))).......((....))..---)))))))-..)))))). ( -26.13) >consensus AAAUGCUGUCGCUCUGCCAAUGGAGCGCAACAAUUCACAAAUAGCAACGGC_CAACGGUAAUGGCAAAUAUGAAUGCACAUAC___UGCAUCACAUGCAUUUG ((((((((.((((((......))))))))..............((............((....))........((....))......)).......)))))). (-16.03 = -14.80 + -1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:13 2006