Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,728,982 – 22,729,081 |
Length | 99 |
Max. P | 0.996693 |
Location | 22,728,982 – 22,729,081 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -17.63 |
Consensus MFE | -15.89 |
Energy contribution | -16.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -2.49 |
Structure conservation index | 0.90 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22728982 99 - 23771897 AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA .....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20) >DroPse_CAF1 12745 99 - 1 GGAAUGUUUAUAUCAAAGUAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA ....(((...(((((.(((.((((((((((....-.))))))))))..............--------.....(((.....)))))).)))))...)))......... ( -19.60) >DroEre_CAF1 6450 99 - 1 AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA .....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20) >DroWil_CAF1 11750 108 - 1 AGAAAGAAUAUAUCAAAUCAAAUUGUGGCAAAUUGAUGCUAUAAUUCCAAUAAAAGCAAAAAAAAAAAACUUAGACUGAAUGUCACUGUGAUAAAUGCAAAGUAAAAC ..........(((((.....((((((((((......))))))))))...........................(((.....)))....)))))............... ( -15.00) >DroYak_CAF1 6454 99 - 1 AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAUUAAAAA .....((...(((((.((..((((((((((....-.))))))))))..............--------.....(((.....))).)).)))))...)).......... ( -17.20) >DroPer_CAF1 12956 99 - 1 GGAAUGUUUAUAUCAAAGUAAAUUAUGGCAAAUU-AUGCUAUAAUUCCAAUAAAAGCAAA--------AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA ....(((...(((((.(((.((((((((((....-.))))))))))..............--------.....(((.....)))))).)))))...)))......... ( -19.60) >consensus AGAACGUUUAUAUCAAAGAAAAUUAUGGCAAAUU_AUGCUAUAAUUCCAAUAAAAGCAAA________AUUUAGACUGAAUGUCGCUGUGAUAAAUGCAAAGUAAAAA .....((...(((((.((..((((((((((......))))))))))...........................(((.....))).)).)))))...)).......... (-15.89 = -16.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:09 2006