Locus 8725

Sequence ID 3L_DroMel_CAF1
Location 22,725,696 – 22,725,787
Length 91
Max. P 0.797006
window14290

overview

Window 0

Location 22,725,696 – 22,725,787
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -11.83
Consensus MFE -10.07
Energy contribution -10.07
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.85
SVM decision value 0.60
SVM RNA-class probability 0.797006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22725696 91 - 23771897
AACCACAAACUGCAACUGCAAAUGCAAUAGUACCAACGUAAGUAAAUCAAUUAUUUCACUAAUUUCGCUAACAUAUAGCUAAUGCACCAAG--
..........(((....)))..((((.((((....((....)).....(((((......))))).............)))).)))).....-- ( -10.40)
>DroSec_CAF1 3280 91 - 1
AACCACAAACUGCAACUGCAAAUGCAAUAGUACCAACGUAAGUAAAUCAAUUAUUUCACUAAUUUCGCUAACAAAUAGCUAAUGCACCAAG--
..........(((....)))..((((.((((....((....)).....(((((......))))).............)))).)))).....-- ( -10.40)
>DroSim_CAF1 3274 91 - 1
AACCACAAACUGCAACUGCAAAUGCAAUAGUACCAACGUAAGUAAAUCAAUUAUUUCACUAAUUUCGCUAACAAAUAGCUAAUGCACCAAG--
..........(((....)))..((((.((((....((....)).....(((((......))))).............)))).)))).....-- ( -10.40)
>DroEre_CAF1 3263 91 - 1
AAUCACAAACUGCAACUGCAAAUGCAAUAGUACCAACGUAAGUAAAUCAAUUAUUUCACUAAUUUUGCUAACAAAUAGCUAAUGCACCAAG--
..........(((....)))..((((.((((......((.((((((.................)))))).)).....)))).)))).....-- ( -12.33)
>DroYak_CAF1 3276 91 - 1
AAUCACAAACUGCAACUGCAAAUGCAAUAGUACCAUCGUAAGUAAAUCAAUUAUUUCACUAAUUUUGCUAACAAAUAGCUAAUGCAACAAG--
..........(((....)))..((((.((((......((.((((((.................)))))).)).....)))).)))).....-- ( -12.63)
>DroAna_CAF1 4231 93 - 1
AAACAAAAACUGCAACUGCAAAUGCAAUAGUACCAAAGUAAGUAAAUCAAUUAUUUUACACAUUUUGCUAACAAAUAGCGAAUGCAUCAAAGA
..........(((....))).(((((...............(((((........)))))....(((((((.....))))))))))))...... ( -14.80)
>consensus
AACCACAAACUGCAACUGCAAAUGCAAUAGUACCAACGUAAGUAAAUCAAUUAUUUCACUAAUUUCGCUAACAAAUAGCUAAUGCACCAAG__
..........(((....)))..((((...........((((((((.....)))))).)).......((((.....))))...))))....... (-10.07 = -10.07 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:08 2006