Locus 8723

Sequence ID 3L_DroMel_CAF1
Location 22,703,443 – 22,703,553
Length 110
Max. P 0.638167
window14288

overview

Window 8

Location 22,703,443 – 22,703,553
Length 110
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 74.59
Mean single sequence MFE -26.30
Consensus MFE -17.83
Energy contribution -17.83
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.68
SVM decision value 0.22
SVM RNA-class probability 0.638167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22703443 110 + 23771897
GGGUUGAGAAUCGUCGUGGCUACCUUGCAAGUACAAUCAGUUGUUUCCAAUGAUAGCUAUGACCAUUUUAAGUGGUAUGCGCAUAGUCGCAUAUCUAACCUGCAAAGAAA
(((((((((((.(((((((((((.(((.....((((....))))...))).).)))))))))).)))))....((((((((......))))))))))))))......... ( -32.90)
>DroSec_CAF1 19158 87 + 1
GGGUUGAGAAAAGUCGUGGCUGCCUUGCAAGGACAGUCAGUCGCUUCCAAUCAUAGCUAUGACCAUUUAAUUUGGGGAACGCAUAAU-----------------------
.(((((.(((..(.(.(((((((((....))).))))))).)..))))))))...((.....(((.......))).....)).....----------------------- ( -23.00)
>DroSim_CAF1 21365 87 + 1
GGGUUGAGAAAAGUCGUGGCUGCCUUGCAAGGACAGUCAGUCGCUUCCAAUCAUAGCUAUGACCAUUUAAUUUGGGGAACGCAUAAU-----------------------
.(((((.(((..(.(.(((((((((....))).))))))).)..))))))))...((.....(((.......))).....)).....----------------------- ( -23.00)
>consensus
GGGUUGAGAAAAGUCGUGGCUGCCUUGCAAGGACAGUCAGUCGCUUCCAAUCAUAGCUAUGACCAUUUAAUUUGGGGAACGCAUAAU_______________________
(.(((........(((((((((..(((.((((((.....))).))).)))...)))))))))(((.......)))..))).)............................ (-17.83 = -17.83 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:06 2006