Locus 8722

Sequence ID 3L_DroMel_CAF1
Location 22,694,104 – 22,694,202
Length 98
Max. P 0.582828
window14287

overview

Window 7

Location 22,694,104 – 22,694,202
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 95.89
Mean single sequence MFE -23.50
Consensus MFE -23.15
Energy contribution -22.93
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.99
SVM decision value 0.10
SVM RNA-class probability 0.582828
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22694104 98 - 23771897
AGUGAGAAUGGGGAGAAUUGGUCGAGGAACUUGAAUUCCCUGAACAAAUACGCGUACAUAGCAAAGUAACCCCGUCAUAUCUCAUCACUAUAGUCAAA
.((((((((((((....(((.(((.((((......)))).))).)))....((.......)).......))))))....))))))............. ( -23.60)
>DroSec_CAF1 15035 96 - 1
AGUGAGAAUGGGGAGAAUUGGUCGAGGAACUUGAAUUCUCUGAACAAU--CGCGUCCAUAGCAAAGUAACCCCGUCAUAUCUCAUCACUUUAGUCAAA
.((((((((((((.((.(((.(((((((.......))))).)).))))--)((.......)).......))))))....))))))............. ( -23.30)
>DroSim_CAF1 16932 96 - 1
AGUGAGAAUGGGGAGAAUUGGUCGAGGAACUUGAAUUCCCUGAACAAA--CGCGUCCAUAGCAAAGUAACCCCGUCAUAUCUCAUCACUAUAGUCAAA
.((((((((((((....(((.(((.((((......)))).))).))).--.((.......)).......))))))....))))))............. ( -23.60)
>consensus
AGUGAGAAUGGGGAGAAUUGGUCGAGGAACUUGAAUUCCCUGAACAAA__CGCGUCCAUAGCAAAGUAACCCCGUCAUAUCUCAUCACUAUAGUCAAA
.((((((((((((....(((.(((.((((......)))).))).)))....((.......)).......))))))....))))))............. (-23.15 = -22.93 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:05 2006