Locus 8721

Sequence ID 3L_DroMel_CAF1
Location 22,672,997 – 22,673,091
Length 94
Max. P 0.522505
window14286

overview

Window 6

Location 22,672,997 – 22,673,091
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.79
Mean single sequence MFE -25.89
Consensus MFE -15.53
Energy contribution -16.42
Covariance contribution 0.89
Combinations/Pair 1.11
Mean z-score -1.47
Structure conservation index 0.60
SVM decision value -0.02
SVM RNA-class probability 0.522505
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22672997 94 - 23771897
GAGUAACGAACAUGCUUACUUUUAUUCAUUCCU---------UGCAGGCAAUUGCUAACUGGCGUCGAAAAUCUGCGACAGAUGGCAGCUAGCCUAGAGCAAC
((((((.(......)))))))...........(---------(((((((..((((((.(((.(((.(.....).))).))).))))))...))))...)))). ( -22.40)
>DroVir_CAF1 14837 99 - 1
GGACCACACACAGC---GCUAUAA-UCUUUCCUUCUCAUUGCCACAGGCAAUUACUGGCAGGCGUGGAUAAUCUACGCCAAAUGGCUGCCAGCCUGGAACAGC
..........(((.---(((....-............((((((...))))))....(((((((((((.....))))))).......))))))))))....... ( -28.21)
>DroSec_CAF1 10755 94 - 1
GAGUAACGAACAUGCUUACUAUAAUUCAUUCCU---------UGCAGGCAAUUGCUAACUGGCGUCGAAAAUCUGCGACAGAUGGCAGCUAGCCUAGAGCAAC
(((((.......)))))...............(---------(((((((..((((((.(((.(((.(.....).))).))).))))))...))))...)))). ( -22.30)
>DroSim_CAF1 10795 94 - 1
GAGUAACGAACAUGCGUACUAUAAUUCAUUCCU---------UGCAGGCAAUUGCUAACUGGCGUCGAAAAUCUUCGACAGAUGGCAGCUAGCCUAGAGCAAC
.((((.((......))))))............(---------(((((((..((((((.((...((((((....)))))))).))))))...))))...)))). ( -23.20)
>DroEre_CAF1 12765 94 - 1
GAGUAACAAACAGGGUUACUAUAAUUCAAACCU---------UGCAGGCAAUUGCUAACUGGCGUGGAAAAUCUGCGUCAGAUGGCAGCUAGCCUCGAGCAAC
.((((((.......))))))...........((---------((.((((..((((((.((((((..(.....)..)))))).))))))...)))))))).... ( -34.30)
>DroYak_CAF1 14500 88 - 1
GACGAUGACAG------AUGAUAAUUCAUUCCU---------UGCAGGCAAUUGUUAACUGGCGUGGAAAAUCUGCGACAGAUGGCAGCUAGCCUCGAGCAAC
..........(------((((....))))).((---------((.((((..((((((.(((.((..(.....)..)).))).))))))...)))))))).... ( -24.90)
>consensus
GAGUAACAAACAUGCUUACUAUAAUUCAUUCCU_________UGCAGGCAAUUGCUAACUGGCGUCGAAAAUCUGCGACAGAUGGCAGCUAGCCUAGAGCAAC
..........................................(((((((..((((((.(((.((..(.....)..)).))).))))))...))))...))).. (-15.53 = -16.42 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:04 2006