Locus 8720

Sequence ID 3L_DroMel_CAF1
Location 22,664,918 – 22,665,038
Length 120
Max. P 0.630602
window14285

overview

Window 5

Location 22,664,918 – 22,665,038
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.94
Mean single sequence MFE -43.11
Consensus MFE -34.61
Energy contribution -34.42
Covariance contribution -0.19
Combinations/Pair 1.33
Mean z-score -1.68
Structure conservation index 0.80
SVM decision value 0.20
SVM RNA-class probability 0.630602
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22664918 120 + 23771897
GUGGGUCUGGGAAAGCGAGACACCAGUCGCAGACUCCUUGACUAUCCCUUCGCUCCCGGAAACGUGAUGUCGCUGCGGCUGUCAAUCUCUAUUCCCGAUGACUGCUGCCAGGCCUACCCC
(((((((((....(((((.((((.(((((.((....)))))))..............(....)))).).)))))(((((.((((.((.........)))))).))))))))))))))... ( -43.00)
>DroVir_CAF1 4035 120 + 1
GUGGGCCUGGACUAUGGGGAAAGCAGCGAUCAGCUGCUCAACUAUCAUCUGAUGCCCGGCAACGUGAUCUCCAUGCAGCUAUCCAUAUAUAUACCAAACGAUUGCCUCCAGGCCUAUCCG
(((((((((((....(((...((((((.....))))))....((((....)))))))((((((((................................))).))))))))))))))))... ( -42.95)
>DroSec_CAF1 2749 120 + 1
GUGGGUCUGGGAAAGCGAGACACCAGUCGCAGACUCCUUGACUAUCCCUUCGCUCCCGGAAACGUGGUUUCGCUGCGGCUGUCAAUCUCUAUUCCCGAUGACUGCUGCCAGGCCUAUCCC
(((((((((....((((((((...(((((.((....)))))))............(((....)).)))))))))(((((.((((.((.........)))))).))))))))))))))... ( -44.10)
>DroSim_CAF1 2764 120 + 1
GUGGGUCUGGGAAAGCGAGACACCUGUCGCAGACUCCUUGACUAUCCCUUCGCUCCCGGAAACGUGGUGUCGCUGCGGCUGUCAAUCUCUAUUCCCGAUGACUGCUGCCAGGCCUAUCCC
((((((((((....(((.((((((.((((.((....))))))..............((....)).))))))..)))(((.((((.((.........)))))).))).))))))))))... ( -42.70)
>DroEre_CAF1 3852 120 + 1
GUGGGCCUGGGAAAGCGAGACACCAGUCGCAGACUCCUGGACUAUCCCUUCGCUCCUGGAAACGUGGUUUCGCUGCGCCUGUCCAUUUCUAUUCCUGAUGACUGCUGCCAGGCCUACCCC
((((((((((...((((((((..(((((.(((....)))))))..............(....))..))))))))..((..(((....((.......)).))).))..))))))))))... ( -44.30)
>DroYak_CAF1 2748 120 + 1
GUGGGUCUGGGAAAGCGAGACACCAGUCGCAGACUCCUAGACUAUCCCUUCGCUCCCGGAAACGUGGUUUCGCUGCGCCUGUCCAUUUCUAUUCCUGAGGAUUGCUGCCAGGCCUACCCC
((((((((((...((((((((...((((..((....)).))))............(((....)).)))))))))..((..((((...((.......)))))).))..))))))))))... ( -41.60)
>consensus
GUGGGUCUGGGAAAGCGAGACACCAGUCGCAGACUCCUUGACUAUCCCUUCGCUCCCGGAAACGUGGUUUCGCUGCGGCUGUCAAUCUCUAUUCCCGAUGACUGCUGCCAGGCCUACCCC
(((((((((....((((((((...((((...))))....................(((....)).)))))))))(((((.((((..............)))).))))))))))))))... (-34.61 = -34.42 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:03 2006