Locus 8719

Sequence ID 3L_DroMel_CAF1
Location 22,660,444 – 22,660,564
Length 120
Max. P 0.546576
window14284

overview

Window 4

Location 22,660,444 – 22,660,564
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.56
Mean single sequence MFE -41.80
Consensus MFE -26.34
Energy contribution -25.93
Covariance contribution -0.41
Combinations/Pair 1.39
Mean z-score -1.50
Structure conservation index 0.63
SVM decision value 0.03
SVM RNA-class probability 0.546576
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22660444 120 + 23771897
CGGAUCUUGCUGAAGCACGAGACGAGUAAAGGCUAAGCUGAGGAGAAGUGCCUGGCCUAGAAGCUCGCGCUGGUAGCGCUCUUGUUGUGAGAAUUCGAGGCGUAGGUCAGCGGGAAAGUC
....((((((((((((.((((.(...(..((((((.((...........)).))))))..).))))).)))....((((.((((..((....)).))))))))...)))))))))..... ( -40.80)
>DroPse_CAF1 22774 120 + 1
CGGAUCCUGCAGGAGAACGAGUCGUGCGAACGCCAGGUUCAGCAGAAAAGCCUGACCCAGCAGCUCGCGCUGAUAGCGCUCCUGCUGAGAGAACAUAUUUCUCAGGUCCGCAGGGAACUG
((((((..(((((((..(..(((((((((.(((..((((..((......))..))))..)).).)))))).))).)..)))))))(((((((.....)))))))))))))(((....))) ( -50.40)
>DroSec_CAF1 29760 120 + 1
CGGAUCUUGCUGAAGCACGAGACGAGUAAAGGCUAAGCUGAGGAGAAGUGCCUGGCCUAGGAGCUCGCGCUGAUAGCGCUCUUGCUGCGAGAAUACGAGGCGUAAGUCAGCGGGAAAGUC
....(((((((((.((((((((.((((..((((((.((...........)).))))))....))))((((.....))))))))).))).....((((...))))..)))))))))..... ( -43.20)
>DroEre_CAF1 24796 120 + 1
CGGAUCUUGUUGAAGAACGAGACGAGUAAAAGCUAAGCUAAGGAGAAGUACCUGGCCUAGAAGCUCGCGCUGGUAGCGCUCUUGCUGAGAGAAUAAAAGGCGUAGGUCAGCGGGAAAGUU
....(((((((....))))))).((((.....(((.((((.((.......)))))).)))..))))((((.....))))(((((((((..................)))))))))..... ( -33.67)
>DroYak_CAF1 38237 120 + 1
CGGAUCUUGUUGAAGCACGAGACGAGUAAAAGCUAAGCUGAGAAGAAGUGCCUGGCCUAAAAGUUCGCGCUGGUAGCGCUCUUGCUGCGAAAAUAGAUGGCGUAGGUCAGCGGGAAAGUG
....(((((((((.((((......(((....)))...((....))..))))((((((......(((((((.....))((....)).))))).......))).))).)))))))))..... ( -32.32)
>DroPer_CAF1 22854 120 + 1
CGGAUCCUGCAGGAGAACGAGUCGUGCGAACGCCAGGUUCAGCAGAAAAGCCUGACCCAGCAGCUCGCGCUGAUAGCGCUCCUGCUGAGAGAACAUAUUUCUCAGGUCCGCAGGGAACUG
((((((..(((((((..(..(((((((((.(((..((((..((......))..))))..)).).)))))).))).)..)))))))(((((((.....)))))))))))))(((....))) ( -50.40)
>consensus
CGGAUCUUGCUGAAGAACGAGACGAGUAAAAGCUAAGCUGAGGAGAAGUGCCUGGCCUAGAAGCUCGCGCUGAUAGCGCUCUUGCUGAGAGAAUACAAGGCGUAGGUCAGCGGGAAAGUG
....(((((((((....(((((.((((....((((.((...........)).))))......))))((((.....)))))))))(((((...........))))).)))))))))..... (-26.34 = -25.93 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:02 2006