| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,644,447 – 22,644,556 |
| Length | 109 |
| Max. P | 0.699935 |
| Location | 22,644,447 – 22,644,556 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -16.31 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22644447 109 + 23771897 GUUU-UUACCUUUAAUCCUGAUUAAUCACCCUCUGUUUGUGAGUUUAUUGGAUUCAAUUUGUGGCUAAAACUC-AACAAACAUUUGCAUUUAGAAUUUUACUUGGUGAAAU------ ..((-(((((.(((((....)))))........(((((((((((((..(((...(.....)...)))))))))-.))))))).....................))))))).------ ( -19.30) >DroSec_CAF1 13520 103 + 1 GUUUUUUACCUUUAGUCCUGAUUAGUUUCCCUCUGUUUGUGAGUUUAUUGUUUUCAAUAUGUGGCUAAAGCUCUAACAGACAUUU--------------UCUUGGUGAAAUCUCCAU ...(((((((.(((((....)))))......((((((...((((((...(((..........)))..)))))).)))))).....--------------....)))))))....... ( -17.60) >DroSim_CAF1 11826 103 + 1 GUUUUUUACCUUUAGUCCUGAUUAGUUUCCCUCUGUUUGUGAGUUUAUUGUUUUCAAUAUGUGGCUAAAGCUCUAACAGACAUUU--------------UCUUGGUGAAAUCUCCAU ...(((((((.(((((....)))))......((((((...((((((...(((..........)))..)))))).)))))).....--------------....)))))))....... ( -17.60) >consensus GUUUUUUACCUUUAGUCCUGAUUAGUUUCCCUCUGUUUGUGAGUUUAUUGUUUUCAAUAUGUGGCUAAAGCUCUAACAGACAUUU______________UCUUGGUGAAAUCUCCAU ...(((((((.(((((....)))))........(((((((((((((((((....)))).........))))))..))))))).....................)))))))....... (-16.31 = -15.77 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:01 2006