Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,642,617 – 22,642,723 |
Length | 106 |
Max. P | 0.594774 |
Location | 22,642,617 – 22,642,723 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 82.45 |
Mean single sequence MFE | -43.74 |
Consensus MFE | -27.24 |
Energy contribution | -28.96 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.17 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594774 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22642617 106 + 23771897 UGGAGGAGGUCCCGGUCCACAAAAGCAGCAGGCGGACGAGGGAGCCGUGAUUCAGGAUGGACUUAACACGAAGGGGCCAUGUGGCCCGGCAAAAGUUGUCCUCGAG ..(((((.(((((.((((.(...........).))))..))))((((((.((.((......)).)))))....(((((....))))))))......).)))))... ( -40.00) >DroSec_CAF1 11508 106 + 1 UGGAGGAGGUCCCGGUCCACGCAAGCAGCAGGCGGACGAGGGAGCCGGGCUGCAGGAUGGACUUAACACUCAGGGGCCAUGUGGCCCGGCAAAACUUGUCCUCGAG ..(((((.(((((.((((.(((.....)).)..))))..))))(((((((..((...(((.(((........))).)))))..)))))))......).)))))... ( -47.70) >DroSim_CAF1 9909 106 + 1 UGGAGGAGGUCCCGGUCCACGCAAGCAGCAGGCGGACGAGGGAGCCGGGCUGCAGGAUGGACUUAACACUCAGGGGCCAUGUGGCCCGGCAAAACUUGUCCUCGAG ..(((((.(((((.((((.(((.....)).)..))))..))))(((((((..((...(((.(((........))).)))))..)))))))......).)))))... ( -47.70) >DroEre_CAF1 8762 91 + 1 UGGAGGAGAAC--------------CAGGAGUCGGCCCAGGAAGCCGUGCUGCGGGAUGGUCCCAACACUCAGGGGCCAUGUGGCGCG-CCAAAGUUGUCCUCGAG ..(((((.(((--------------........(((.......)))((((.((.(.((((((((........)))))))).).)))))-)....))).)))))... ( -40.40) >DroYak_CAF1 20103 106 + 1 UGGUGGAGAACCUGGUCGACGAAAUCAGGAGUCGGACCAGGAAGCCUGGCUGCAGGAUGGUCUUAACACUCAGGGGCCAUGUGGCGCGGCCAAAGUUGUCCUCAAG (((.(((.((((((((((((..........))).))))))).....(((((((.(.((((((((........)))))))).)...)))))))...)).)))))).. ( -42.90) >consensus UGGAGGAGGUCCCGGUCCACGAAAGCAGCAGGCGGACGAGGGAGCCGGGCUGCAGGAUGGACUUAACACUCAGGGGCCAUGUGGCCCGGCAAAAGUUGUCCUCGAG ..(((((.(.((..((((...............))))..))..(((((((((((...(((.(((........))).))))))))))))))......).)))))... (-27.24 = -28.96 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:23:00 2006