Locus 8716

Sequence ID 3L_DroMel_CAF1
Location 22,641,755 – 22,641,874
Length 119
Max. P 0.922704
window14281

overview

Window 1

Location 22,641,755 – 22,641,874
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 80.61
Mean single sequence MFE -30.28
Consensus MFE -15.46
Energy contribution -18.02
Covariance contribution 2.56
Combinations/Pair 1.17
Mean z-score -2.51
Structure conservation index 0.51
SVM decision value 1.15
SVM RNA-class probability 0.922704
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22641755 119 + 23771897
CUCUCAGCCGGAUUACUCUGCUCCUCCUGCUCCUUCUGGCCACGCGGCCUCUUUUCCGGAACCACCUCGAUUUAUAUAUCAGGUUCACUUUCUUGGGCCUCCCACUCUUGCUGGGGGAA
((((((((((((.......((.......)).......((((....)))).....))))(((((.....(((......))).))))).......((((...)))).....)))))))).. ( -33.50)
>DroSec_CAF1 10670 119 + 1
CUCUCCGCCGGCUCACCCUGCUCCUCCUGCUCCUUCUGGGCACCCGGCCUCUUUUCCGGAACCACCUCGAUUUAUAUAUCAGGUUCACUUUCUUGGGCCUCCCACUCUCGCUGGGGGAA
...(((.(((((...............(((.((....)))))...(((((........(((((.....(((......))).)))))........)))))..........))))).))). ( -34.39)
>DroSim_CAF1 9071 119 + 1
CUCUCCGCCGGCUCACCCUGCUCCUCCUGCUCCUUCUGGGCACCCGGCCUCUUUUUCGGAACCACCUCGAUUUAUAUAUCAGGUUCACUUUCUUGGGCCUCCCACUCUCGCUGGGGGAA
...(((.(((((...............(((.((....)))))...(((((........(((((.....(((......))).)))))........)))))..........))))).))). ( -34.39)
>DroEre_CAF1 7901 110 + 1
CUCUGCU---------CCUGCUCCUCCUGCUCCUUCUGGCCACCCGGCCCUUUUUCCGGAAGCACCUCGAUUUAUAUAUCAGGUUCACUUUCUUGAGCCUCCCACUCUCACUGGCCGCA
....((.---------...((.......)).......(((((.((((........)))).........(((......)))(((((((......)))))))...........))))))). ( -25.50)
>DroYak_CAF1 19273 98 + 1
CUCUCCU---------------------CCACCUUCUGGCCACCCGGCCCCUUUCCCGGAACCAGCUCGACUUAUAUAUGAGGCUUAGUUUCUUGGGCCUCUAACUCUCACUGUCCGAA
.......---------------------.........((((....)))).......((((..(((...((.(((.....(((((((((....)))))))))))).))...))))))).. ( -23.60)
>consensus
CUCUCCGCCGG_U_ACCCUGCUCCUCCUGCUCCUUCUGGCCACCCGGCCUCUUUUCCGGAACCACCUCGAUUUAUAUAUCAGGUUCACUUUCUUGGGCCUCCCACUCUCGCUGGGGGAA
.....................((((((.((.......((((....))))........(((........(((......))).((((((......))))))))).......)).)))))). (-15.46 = -18.02 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:59 2006